RNA id: TU352485


Basic Information

Item Value
RNA id TU352485
length 2231
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G297670
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17705600 ~ 17760410 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCACTTTAAAAGAAAGCTTTAATTAGAAATagttatatacacacacaaactgtagaattaaattaaactttatacaaatattaaaatactatCTTCACACCCACTGCAatgtacagagaaaaaaaaacaattgaaaaGGGTAAGATGAGATGGGTAACACCATTCAATGGTGTCAaggatttctgttttttttttttttttaaagtacaacAACCAAAAGAACAGAAAGTACAACTTTAGACCTGCAGCGAACTTCAGATATCAAagtcactgatttaaaaaaaaaaaagctttgggCAAGAAAACAgcatctgaaaaataaagaacaaagaacCCGACACCCTCTGAAAAAGCCGTAAGACTGTTAATGCAtaggaaataaaacataaaggcTGTAAGGAAAACTGAAGACGAATCAACACCGTGATGGAAGAAACATgattacaaaaataatgaaatgtacaagTCTTATTAAGGCGAAAGCTCGGCTCTGTCTTCTTTCCATTTtgcaaaggggaaaaaaaaataaaaataaaaaaaaataaaaaggatgtCTGACCACACAAACCTGACTCTCACTTTTCTGAAATCAGGTAAGCCAAAATATGAGGACAAGCAATGATGGATCTGTCCGTTATCAACTTGTCCAATGATCAGTAAGTAGTTACTGTGCAATTAAATGTACATGCAAAAATGCACATACATGACCAAGAGCTGCTTTTAGCTGgttgaaagaggaaaaaaaaaaaaaaaaaagcttacttTTAGAGGGATTTgttcaggggtggacaaatcataaatttaataGCAATGACAGCACAGAAAGTCTAATTAAGTGTAATTTAACTCAAAAGCGTGACGATATAATTACGTGTGTTGACACAGACGATGGAAAAGaagcaattttaatttttaatcctCTCCTGATCATGTCTTTGGCTAACATTTATGATGCAGTATTCTGTCATCGCATGTAAAAAGACGTTATTTAATCTAGCTAGCGTCTTCGTTTTCACTTGATGACTgcgcattattattattattttttttttgcactccaCTGTTTTCTGCTCCGTTGTCCTCGTTTCTACATTCTGGAAATATTGTCTAGCATCCACTCAAGCTAATTATCGtgcatagtaaaaaaaaaatagctccTATCAATAGTCACTGGGTTTGTGCGTAGTGCAGCAGGTGACGAGATTCGGAAAAGAGTAGCGTTGAGTTGCTTTTGATCCAACTGGAACGTGTTgcgtttaaataaaaataacaatgaaatGAACGATGAAAcataataatgttttcttttgcagaAGGCAGACGTAATAAGCTCCATATTTTAATTTCggtcaaaaatacaccaaaagatcATTCTCTAATCACTGGACCCCCCCTTGAATTATTCCTCGTCAGGGTTTCAGGTTTGGGAAGTAgaatttttctgctttttttaggattttgtaataaaaaaaaagaaccctgAAAGCTTGGCACCTAAACTAGTGATCTGTCCACCCCTTCACATGAGTGTTGCTAAATTCAGCTTTCTTTCTGGCGTAATCTTGTTTATTTAGtacacctcatacacacacagctggacaAACAGAACGACCCAAAGACATTTAAAAGCAAACTACGACGTGGTCAGTTATCCGACAGCAGGGCACTTTATGGAAGTCCCCTACATGCCCCATCACCCGTCTGGGCTCCACGCCGCCGTGGAGTCAAGTGGTCACTTTTGGAGGAGAACCGAAAGCTCATGCACACGCACAGGTTGATGCTTGGAGGAGAGTTGaagagttttttaaaaaaaacttaaacagtgttgattatttaaaaTCCTCACTTTAAGCAGTGCACATAGCTGAGAGAGGAAATTCAGATGCGATTTGATAGAGGACACATTTTGTATATGTCTACACTCTGAGTTGCTCCTTCTGCAGCTCGCTCGGTGTAGGTCAGATCTTCTGAACGAGTAGTTAGCGTGTCTGTAAGGGCTAAACTCTATTAGAATAAGCATTGTTATTTCAAAATGCAGCAGTCAGACCTTGAATGAAATCTCCTAGTAAATAAAGTGCCGTCTTAGACATACTAATCAGGCTTGGTGTATCAATCTCTTAGTaaagttttatgtaaataattttgtatgCAAAACTGAGCAAATCCTTGTTTAATGCTGTTTGTCCCAATGTGATTTGAACCTCATTATGGACTATGATGATGATCTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352232 lncRNA downstream 48789 17656225 ~ 17656811 (-) True G297465
TU352201 lncRNA downstream 198942 17505906 ~ 17506658 (-) False esr1
TU352197 lncRNA downstream 222713 17482324 ~ 17482887 (-) True G297442
XR_003403302.2 lncRNA downstream 284148 17415966 ~ 17421452 (-) True LOC113531886
TU352043 lncRNA downstream 469489 17233977 ~ 17236111 (-) True gtf2h5
TU352529 lncRNA upstream 81151 17841561 ~ 17842853 (-) True G297712
TU352538 lncRNA upstream 94475 17854885 ~ 17953471 (-) True G297718
TU352540 lncRNA upstream 104878 17865288 ~ 17865651 (-) True G297720
TU352544 lncRNA upstream 114042 17874452 ~ 17874744 (-) True G297724
TU352672 lncRNA upstream 358758 18119168 ~ 18176606 (-) True G297839
XM_026923490.2 mRNA downstream 6040 17683997 ~ 17699560 (-) True gpr176
XM_026923693.2 mRNA downstream 39472 17608591 ~ 17666128 (-) True mthfd1l
XM_026923781.2 mRNA downstream 104840 17538910 ~ 17600760 (-) True akap12b
XM_026922726.2 mRNA downstream 184889 17512447 ~ 17520711 (-) True armt1
XM_026923362.2 mRNA downstream 199418 17485584 ~ 17506182 (-) True esr1
XM_026923631.2 mRNA upstream 209 17760619 ~ 17767511 (-) True LOC113532304
XM_026922895.2 mRNA upstream 8134 17768544 ~ 17775954 (-) True LOC113531908
XM_026922989.2 mRNA upstream 47888 17808298 ~ 17825400 (-) True fntb
XM_026948162.2 mRNA upstream 312135 18072545 ~ 18105993 (-) False dpf3
XM_026948163.2 mRNA upstream 312135 18072545 ~ 18105993 (-) False dpf3
TU351727 other downstream 658790 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 1147673 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 1147673 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 1198687 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 1562996 16134167 ~ 16142604 (-) False pln
XR_003404857.2 other upstream 314952 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 1317594 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 1505417 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 1630589 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 1687983 19448393 ~ 19451604 (-) False LOC113524711

Expression Profile