RNA id: XM_026948162.2


Basic Information

Item Value
RNA id XM_026948162.2
length 2401
RNA type mRNA
GC content 0.44
exon number 12
gene id dpf3
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18072545 ~ 18105993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaaaaaagtgtaagatTTGGGTTTATTGGGTTACAGTGTGGCAACATGGCGACTGTCATTCACAATCCACTAAAAGCTCTCGGAGATCAGTTCTATAAAGAGGCAATCGAGCACTGTCGCAGCTACAACACCCGCCTGTGTGCCGAGCGCAGCGTCCGAATGCCGTTTCTGGACTCACAGACGGGCGTGGCTCAGAACAACTGCTACATCTGGATGGAGAAGCGACACAGGGGGCCAGGACTGGCTTCGGGTCAGATGTACACGTACCCCGCCCGCTGTTGGAGAAAGAAGAGGCGACTACATCCGCCAATCGACCCTCAGCTCAGACTGTGTGAACTCAGGCTTGcTGAGTTGATGCCAAAGAGAGAAACTCCTCCGGCGGAGGCCACGGCTCTGGAGGCGCTGATCAGAGGAGACGCCCTTCTGGACAAAAGGAGCAGCAGCTCCAAGGAAGAAGAAACTCTGCTGGAGattcagAGGGTGCTCGAGGCTGAGGAGAATGGAGACGGTTTCCATGACGATGATGAGTTCGAGGTGGAGACGCCAAAGAGGAAGCAGAGAAATAAAGGCAGGgGTCGAGGTTCGAGTCGTAAGAAGACGGAGACAGTGACGGGCGACGATCAGGACAAACCCTACGTGTGCGACAACAGATACAAACAAAAGCATAACTCAAAAAGTGCTGACTCAGTTTGTGGTAAACGTTATAAGAATCGGCCTGGTCTGAGCTACcactacacccacacacacctggctgAGGAGGAAGGCGAGGAGGAGAGAGAACCCGAGATCCCTCAATCACCACCCGAAAATAAGACTCAAAACCACAAGCTGCAGAAGGGACCTGACGGTGCGGTCATCGCTAACGACTACTGCGACTTCTGTCTCGGGGACTCGGGCTCTAACAGGAAGACTGGCCAAGCCGAGGAGCTGGTGTCGTGTTCAGACTGCGGACGCTCCGgcCACCCGACTTGCCTTCAGTTCACAGAGAACATGATGCAGGCGGTGAGGACGTACCAGTGGCAGTGTATCGAGTGTAAATCGTGCAGCCTGTGTGGCACCTCAGAGAACGACGATCAGCTCCTGTTCTGTGACGACTGTGATCGGGGATATCACATGTACTGCCTCAAGCCACCCATGACTCAGCCGCCTGAAGGAAGCTGGAGCTGCCATCTTTGTTTGGACTTACTAAAGGACAAGGCGTCTGCTTTTGGAGAACCATAAACACCGTAAAAGAAGTTTCCTTCTTCCATAAGAGCAGAATCGAGTGCCGACCCGAACAACGTTCATCCATCTCACCTACACCGCacaaagtcacacacactccactcagaAATCTACCTCACAActctgggaaaaaaagcaacacgAGATATCTTTTTGAAAATCAGAATGAAACACATCAGCTTAGAAAAGGTCTTCGTTTTAAAATCAGCTTAAAGTcagattttaaatgagatgcgagtttttaaataatcataCAAATCTGTATTTTAATGCACTCAGTTTTAATATGTATGATAAATGCTTTGTATAAACTTTCACACCAAATGCCAGCCTGTTTCTGGTGTTTGTCtgtcactttcatttttttttaaagtaaattgtAGACTTTTTTTCTAGAACTGTAATAATCCTATAATTTTAAAGATGCTTCAGATAAACTGTGATTGACGATACAGTGGATTCGGCTCATATCGGCTTTATTTCAGGCTCCTGGTTGTATTTAAACTCTGCCCCCTGCTCAGCCTTGccctttattttaaaagcaacCGTTGATTTATTGTGATTGCAATTCAGTTTTAAAggaaacagaaatattacaaactgcCCCTTTAAATTCTGTAcattatacaaaaaatataattgcAAAATATAACAGCTGAGATTTGGATTTTGGACAGGATGCAAGATTTTCCTtcaaaagaatataaaattgCCTGGAAACAGTTGtcatgtgtttagtgtgtatcttCCACTAGATTAGTGATAtccctgctctttttttttttttttttttgtacttcttCCCTCATCATATATTAGCGTCTCTATTTCTGTCTGGATGTTCTCGCTTGTcgtctcttcttcttcctcctctgttCTCTATAATGCATTAGAGGCTCTATTTTCAGAGCCAATTCATCAAGACCAATCCTCACATCTGCTGAATATTTTATCTCTTCCTGGCAAGGACTGTCTAACAGACAAAGCagtttaaagactttttttttttttaaatggacaaCTGCAAATTTTGAGGATATATCAACAAGCAGATGAATAGTTTAATAGTGATTTCtaatcatttcctgtttctgccatttgtttgtttttgctttttcttacAAATGTTGTCCTCGTCACTTTCCATAGTTTAATAAATGCAACTTTAAATGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0016514 SWI/SNF complex cellular_component
GO:0042393 histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352538 lncRNA downstream 119074 17854885 ~ 17953471 (-) True G297718
TU352544 lncRNA downstream 197801 17874452 ~ 17874744 (-) True G297724
TU352540 lncRNA downstream 206894 17865288 ~ 17865651 (-) True G297720
TU352529 lncRNA downstream 229692 17841561 ~ 17842853 (-) True G297712
TU352485 lncRNA downstream 312135 17705600 ~ 17760410 (-) True G297670
TU352672 lncRNA upstream 13175 18119168 ~ 18176606 (-) True G297839
XR_004580168.1 lncRNA upstream 50720 18156713 ~ 18159296 (-) True LOC117599806
TU352733 lncRNA upstream 128885 18234878 ~ 18235510 (-) True G297887
TU352734 lncRNA upstream 128885 18234878 ~ 18235400 (-) False G297887
TU352747 lncRNA upstream 147369 18253362 ~ 18253562 (-) True G297900
XM_026922989.2 mRNA downstream 247145 17808298 ~ 17825400 (-) True fntb
XM_026922895.2 mRNA downstream 296591 17768544 ~ 17775954 (-) True LOC113531908
XM_026923631.2 mRNA downstream 305034 17760619 ~ 17767511 (-) True LOC113532304
XM_026923737.2 mRNA downstream 357273 17710711 ~ 17715272 (-) False acot20
XM_034313926.1 mRNA downstream 358148 17710711 ~ 17714397 (-) True acot20
XM_034313660.1 mRNA upstream 10557 18116550 ~ 18130493 (-) True zfyve1
XM_026948100.2 mRNA upstream 60386 18166379 ~ 18169095 (-) True rhov
XM_026948099.2 mRNA upstream 144279 18250272 ~ 18252460 (-) True chac1
XM_026948144.2 mRNA upstream 166083 18272076 ~ 18282680 (-) True dll4
XM_026948147.2 mRNA upstream 469977 18575970 ~ 18580206 (-) True vrtn
TU352481 other downstream 357301 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1025735 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 1514618 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 1514618 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 1565632 16506831 ~ 16506913 (-) True trnal-cag_16
TU353207 other upstream 972011 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 1159834 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 1285006 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 1342400 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 1366027 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile