RNA id: XM_026948147.2


Basic Information

Item Value
RNA id XM_026948147.2
length 3308
RNA type mRNA
GC content 0.46
exon number 2
gene id vrtn
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18575970 ~ 18580206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCACCGCAAAtgggggtgtgtttgtgtgcgcgcgcgcggtgtgtgtgtgtgtgcgtgtgttttccAACTCTGAGACAAAAAGGCCCAATGTGGGTGATTGACAATTTCCTGGAGGAGGATCTTCTCGTTTCAAATGAACTCGGCTCGGAGTCGGATCAGTTTGTGAGTCATGGAGTAAAGTCGCATCCACACACTGCTCCATCTCTGCGCCTCGACtgctagcacacacacatttacacacacacacacacacacactcatacagacGCACACCTGAGGCACACAGGGAGCTGCTTTGTATTTAAGGCATGCTTCAGAGGAAAGAGGTGGTGCTCTCCGTCCTGGAGGAGCTCCAGGAGGCCACCGAGTCCATGGGCTTGGATTCCCTGATAAAAGTGGCCCTTGAGGTGGAACAAGTCCTCGCTCCTTTTAGCCTCCCGACAGCGCTGTGCTCAGAGATCTCCTCTTGGATGGGCATCGACGCTGTGGCTCACAGACTTTACCCAGCAGACGCCCCGGCTGGCCTGCTTCCTCTGGTCTGCAGAGGGGAGGGTAACCTGCTGTTTGACGCTGCCAGCATGCTTCTGGTGGGCTCCACGAGCCTGAGCTTGGAGCTACAGGTCAGGACGGTGGTGGAGATGCTCCTTTGGAAGCAGTACTACCTGTGTGGTATGATCGATTCCAAGGTCATGCTGCAGGCTTCCAGGTTTTCGCTCTGCGCTGAAGAATCACAGGACATGCTCAAGCTGCCTATGCAGGTTCTGGAGGCCATCTTTGATGCTGATGTCAAGGCTTCTTGCTTTCCGAGCTCTTTCGCGAACATGTGGCATGTCTACGCTCTGGCATCTGTCCTCCAGTGCAACATCTACTCTGTTTACCCAATGTATAACCTCAAGATCAGGCCCTATTTCAATCGCCTAATCCGTCCCAGAACGTTGCCCATGGACTCTGAGCCAATGACTCTCCACATTATGTGGTCTGGAGAGCTTGAGACTGGCTCCATTTTCAAACCACGCAACTTTGTGGCCTTAATTCATGCTGGTGATCTCAAAATTGGAAGTCCAGGGAGTGAGCAACGGTTGTCATCGGTTAAGTCCGTGGATCTGCTAAATGAGGATTCACAGCTTTCCTACTCCACCCTGAAAGACAAGTTCAACATCACGAAGAGCACCTTCTATCGCTGGAGGAGACAAAGCATGGAGTATCATAAGAAATCAGTCGCCAGATATGAAGCCAAACACTTTTTCCAGGCCTGCTACAAAGAAGGCAAGCTCATATCCCAGAACCAGTTCAGAGAGTTCTTCCCAGAAATCTCCAGATCCACATATTATGCCTGGAAACATGAACTCATGGCTACTGGAAGTATCGGTTCAGGAGGTTCCACCGGAGAGGTGAGCCCTGGAGATAGCAACGAGCAGGACTACTGGTCCTCTCCGGAGAGCATGAAGCAGCCTGTCCAGGAGACCTTCGCCAGCATGTTGGCACTCAAATCTGAGAAACTGGAAGGAGATCGATTCCAGAATGCAGCCCTGATGCAAGAAGCAAAGAAAAGCCTGCAGAACTGCATCGCCACCAACACATCGTTTCCCTACCGCATTTTCAAAAGAAGGTTCCCAGGAATCTCGAGATCAACTTACTACAATTGGAGGAGGGAAGCCTTGCTGTTCACACCGTTTAAAGATCTGTCAGGAAGCAGGGAAGAAAGCTCGGATCCGGATAAATTCCAGAATCCAAAAGAGAAGCTGTTGCCGCCAGGTTTGCTGGCGAGTCACAGAGTAATCCCGAGAGTCCGGCTCTCGAGGTGCAGTCAGAAGAGTCTCCGGCTGATCTACCTGCAGAAGAAGAAACTCAGAGAGGAAGCCAAAGCACATGTTCAGAAGTCCAAGATGTCGCTGTTCAAATTCAAGCTCAAGTTCCCATCAATATCGTCGTATTACTACTGGCTTTGGAGGTATAAGAAAGCTGGGGAAGAGCCTGATTTGAGTTTTGATGCCCATAAACCGGAAAATGTCGATGCCACGACAGATATCCTGAAGCAGGAGGAAACTCAGGAACGCTTTTCTTTTGACGGAAATGCCGAGTACTTAAACAACCATGTGATCAACACCAGCCCCGAATTCTCTCCATCGTACTATCCTCTATCTGACAAGACCAACAACAACGAGCAGATGTTCGTGATGGACGTCGTGGCGTTGGCGAACTTCAAGGCCAAGGCGAAACTGTTTCTCCAGCAGCGCTTTGAGGAGAAATCGTTCCCTACATTCAAAGAGTTCAGGTCTTACTTTCCTCTCACTCCACGCTCCACTTATTACATGTGGAAGAGGGCTTTGCATCACGGCGTGCCATTAGTTCATGGATAAATTTCTCTTTAAACGCCTCGGGTTAGCCATCACGGCTCAtagtttttacacatttctcatcACCTTGAGTCGGGCATCCAGGTCATTTCTGCTCCACCACAGTGTAATTGCAGTTCATGCATCTTAAttgtgttccttttttttttgttcccccACTTGACTTGACCACTTGGTTGCAGCTCAAGgacatttgcatgtgtgtgaaatcaGACAGTCTGTTTTACACGCCACTCAGCTCCTGATGGCCCTCAGGCAAAAGGCAGTTCAAAGCCACAGATATCAGGATTTCCAAATGACTCTCTTTTGTTTGGGTTTAGCCTttgctttaaattttaaattgactCCCATCATCCATTTCTGTTCATGTCtttcattttaactgttttGAATCCtcctttttttaacagaaaaaatcCTTTATTTTATCTAATCCCATCTCAAGAACAAATCTGTGACTTGTatatttcgttttttttttaattacacgtTTATTGTTtcgtctttttctttttttttttttttttttttttttttaacacacatatatatttttgtattgggTTTGATTTCACTTCGGATACAAGGTACGAAATCTGAATACAGGGTTGAAGCTGTGTTTTGCACATTTGTTCACTGTTCACTTTTGTAAAAGGAAAGTTCTGCTCTTCTTGATGCTGCTAAATTTTGGACAAAGATTTTCTTGTACACTTAAACGGGACGTATGATTTATCTATATAGCTTTTTGTTCTACTACCTATTTTGCGTAATGATTTGTGGAGCTCAGGAAGTTGTTGTTAAAGGAGTTTACATGGCGctcatgacatttatttaaaaacctaaTGTGCAGCTGaggattttttgttgttgttgttaaatttGGTTTAAATTCCTGAGATCAATGAGTGTGATGGATTATAATACAGGAAATAAATCATGTACTCAACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352819 lncRNA downstream 14136 18561597 ~ 18561834 (-) True G297969
TU352816 lncRNA downstream 26357 18549260 ~ 18549613 (-) True G297966
TU352810 lncRNA downstream 43130 18531678 ~ 18532840 (-) True G297960
TU352804 lncRNA downstream 65261 18510487 ~ 18510709 (-) True G297954
XR_004580152.1 lncRNA downstream 149822 18371681 ~ 18426148 (-) True LOC117599783
TU353141 lncRNA upstream 249328 18829534 ~ 18830291 (-) True G298243
TU353202 lncRNA upstream 422134 19002340 ~ 19066932 (-) False G298286
TU353203 lncRNA upstream 422134 19002340 ~ 19066932 (-) True G298286
TU353231 lncRNA upstream 507895 19088101 ~ 19088655 (-) True G298309
TU353274 lncRNA upstream 636432 19216638 ~ 19217239 (-) True G298349
XM_026948144.2 mRNA downstream 293290 18272076 ~ 18282680 (-) True dll4
XM_026948099.2 mRNA downstream 323510 18250272 ~ 18252460 (-) True chac1
XM_026948100.2 mRNA downstream 406875 18166379 ~ 18169095 (-) True rhov
XM_034313660.1 mRNA downstream 445477 18116550 ~ 18130493 (-) True zfyve1
XM_026948163.2 mRNA downstream 469977 18072545 ~ 18105993 (-) False dpf3
XM_026948150.2 mRNA upstream 26315 18606521 ~ 18615280 (-) True zbtb1
XM_034313858.1 mRNA upstream 47170 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313856.1 mRNA upstream 47170 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313857.1 mRNA upstream 47170 18627376 ~ 18633161 (-) True si:dkey-1h6.8
XM_034313846.1 mRNA upstream 55077 18635283 ~ 18668970 (-) False mthfd1a
XR_003404857.2 other downstream 469977 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 860726 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1529160 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 2018043 16555103 ~ 16557927 (-) False G296802
TU353207 other upstream 497798 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 685621 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 810793 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 868187 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 891814 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile