zbtb1 (zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161)


Basic Information

Item Value
gene id zbtb1
gene name zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18606521 ~ 18615280 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948150.2
TGTGCAGGAGAAGGCGTCTCAGCGCTTCCCTCCCACAGGCGTGCATGtattttcatgttcatgtaTGGTTGCATGGTCACTGCAGTTGTTTCTGCATGCATGGCCgcggtaggtaggtaggtagggcGGGCTGCTGCGCATTTGCGTGAGCGGGGCCGGATTTAGATTTAGGGCGGGTTGCATTTGCGTGAGCGAGGCCGGATCTCGCGCAGGCAGCCTCAGTGCGGTGATCCGACTCGCGAGCGCGGCTGTGCGGAAGTCTTTTCATCCCTGCTGGGCTCTGAGTCCTGATtagctctcctcctcctcacaaCTTTCCGCTCGGACTCGAGTCCAAAAATAAGACTAAAAAAGCGATTAGAATTCGCCTGTGAGTTCCTGTTCGCCTCTGGAGCGTCCGTTAACCGTCGTCCTTTACAGGGTGATGGCAAGACCAAGCCACAGTGAGCATGTCCTGCAGCAGCTCAACAACCAGCGGGAATGGGGCTTCCTATGCGACTGCTGCATTGCCATCGGTGACATTTACTTCAGGGCCCACAAGGCTGTGCTGGCAGCCTGCAGCTCCTACTTCAGGATGATGTTCATCCGAGACCAACAGGGCACAGCGCGTCTTGATCTCAGCAACATGCAGATCAGCGCTGAGTGCTTCGACCTCATCCTGCAGCTCATGTACCTCGGCCGCATCGTCGTGGGACATTACGAGTTCGAAGAACTGAAGTCGTCCATGGCTTATCTCCAGATGTACTACATCCCCGACTCGTTGGAGGATCTCCGAGACATCCGTGCGTCCAATCTTACTCCCTCTTCTTCGgcttcctcatcatcatccagTTCCTCATCTTCCTCCAGCGTGGTAGGAGGAAAGATGATGTTTGGCGTTCGCATGTTTGAGCAGCAGAGGCCGAGCCCTGCTAAAAGTGACCATGTGCCTAAAATTTCAAACCCAGCTACTCAGCAAAACATTAATATATCTACTGTAAGGCCCGTTGAGGATGTGATTGTTCCACTTCCTCCAGTGCACACGGAGAATCTTGTAGAACAACCGTGTGATCTGAGAAAGAGAACCTCGGGCCGAAGCGCCACCTTGAAAGAGCGTCCCCGGTTTGGTCGCACTTACACGTGCGACGACTGTGGGTTTGTCTTCAGTTGTGAGAAGCTTCTCATTGAACACATCCTCACATGCACCAACCGCAAGGCATACCAAACCCCAAGAGTCAGCAAAGCGGCCGACAGTGACTCCAGCAAAGGTGAGAGCTCGGCTTCTGAAGGAACCGGAGAGCAGAGAGCGGTTTGTAAAGGTGAGGAAGACTGGCCCGACCACAAGTCTGACACTGAAACTGTCATCAGATCCATTGCCACTGGGATGGACAACGATTCAGCTTCCAACATAAAGATCAAAGTAGAGCAGGAAGAAGACTCGGATACTGAGATGGAAAACATAAAGGTGGTCCAGGTTAGCAACCATAGTGTGGGAAGCTGCAAAGTACGCCGAAGAACATTCAGAACCAATCTTGGAGATAACATAAGATTTGACAGCGAAGAAGAAGCTGGAGTTTCTGCCATAGATGATGGTGCTCTGGAAGGCCACAGTAAGGGTCTGGAAGCGAAGGTTTGCCGGATTAAAGAGGAAAAGCAGGATGGAGATTGCACTCCGTGCGAACTGTGTGGCGCCTTGCTAACCGAGGAGGATCAATCTGCTCATTACATCTCCAGCCACATGGGACACATATGTGCCTGTGGAAGGTGTGGTCAGGTTCTGATTAAAGGCAGGCAGCTGCAGGAGCATGCCGAGCGCTGCGGGGAACCCCAGTGCACTGAAACCGATTCCCCAGGTGAAGAGAGCCCTTTACCGGAAGATACACAGGCCATGGAGGAAGGCTTGATCGAAGGTGCTGACTTGGGCTTCCGTTGTCCTCTTTGTGGCTTGATCTTCGAGACAGAAAGCCTGGCAGTGGAGCACACGCTGGCCTGTCCTGAGCAGGACTCCTTCCGGCCTGCCACGATGGAAGACGAGCCGGACCACCGGCGCAAGCACTTCTGCGCCATCTGCGGCAAAGGGTTCTACCAGCGGTGCCACCTGCGTGAGCACTACACCGTGCACACCAAGGAGAAACAGTTCACCTGCCAGACCTGCGGAAAGCGGTTTCTACGCGAGCGCCAGCTCCGGCTGCACACCGACATGCACAAGGGGATGGCGCGCTACGTGTGCCCCGTGTGCGATCAAGGCACCTTCCTGAAGCACGATCACGTGCGCCACATGATTTCTCACCTGTCGGCCGGAGAGACCATCTGCCAGGTGTGCTTCCAGATCTTTCCCAGCAGCGAGCACCTGGAGAAGCACATGGACGTTCACCTGTACATCTGTGGCGTGTGCGGTGAGAAGTTTCGCCTTCGCAAAGACATGCGAAGCCACTACAACCTAAAGCACACCAAGAGGCAGTAAACGGGGAAGAGGGTATCAtatgatttgttgtttttttttttccccctttttaaatttttaaagccattatttgtgataaatgtgaGAAATCTATGCACTTAGACACCAAATAACCTATGAAACTGCACTTTTAATGGTATGCATAATCCAGGTGTTGTTGGATTCAGTGCCTCTAGCTTTAGGCACACTTTATTcattaaatctcatttcatCTTACTCTACGTGTAACATTTAATAACTCACCAGTTTCAAACAGAAATTTCCTTACGTTCTAGACAAGATTAACTGGTCCATAGTCATTTGATGATCAGTTCTCCTGCCCATCTTACAGAAGTTAAGTATTAAGCcggctttacactgtacaattttTGGCCAGGTGCgttgctgttgtgtaaatcgTAAAAAAGTCCAAATGTGAGGATTTAGTGCCATTACCACCATGGATGACCAACGACAACGTTCTGTCAGTGTCAGAAACTTCTGGTTAAAATCTCAGTCGCTGCTACGATGtttgtctaaaatccaccaactGGAGGACAGCGTAGGATGACGCCGATGTAGACAGTTACATTCTTTATTCATACCTCATTCTTCATTCGTAAGCtcacttgtttgtgtttatgcgaGTCCGTTTTCTGCAAGAGCAAATCTACGGATCTCGCTGAGTGATGATCTAAGCAGTACGTcaatcgttagaggatcttcatcgtaaacacattatcacacaatCTCTTATAGAATTCGGATAAAATCGTTGAttttgtacagtgtgaaaaTTTCTAATCTTATTACACCACTGAAATCGTACAGTATAAAACCAGCTTTAGCAGGACTTTTTTTGgtgctctgtttttttattttctgtgatctgttactttttattattattattattattattttattattatgaatattttgattGGTAGTACATCTGGCAAAATCTTTTCAGGTGTACTTCTTTATAGACCATATTCTTTAAGCCTCTAAGTCTCAAAAGCTGTTTAGCATTAAggtatactgtacatttccttttttttataaacaacagAACactaaaatattgcatttaataCAGTCTTAAAACACTCTTGAACTGACTCATCTCGCTagtttggtttatttttcacCAGTCTCGTTTGTCTTACCCTTAATCTGGGGTTTAATGTATAAACTATGCAAACTCAAGcttattataaatgaatttcTTCAATCAAAATACATTGTGCGTGCTGTGTCAAGTCATTAAACATTAGCCACGGTTGATTTTTTACtacacatctttatttattttaaatgagccCCACTGAAATTCAGACTAGCTTTGTGTAAGAGTGTTCAGAGAttcacattttataattaatgtttaagaaaatcaagcattttttattaacttcttaTTCTGACAAATTCTgagtaaattattaaatgtattaaatgaaaatttttcattttttaaatattcaaaaaaaaaaaaaatctgttgaaaTTAACAGTTCGTAAAATTCCTTACAACAAAATACAGTTTAAGCATCCGAGGTCGGGAAAGGTGCTTGAGCCTGGACCGAATTTACAAacaataaatgtgtgttaataCGTTTCAATGTTACAAATTCAACTGTATAAATTTCATTGTTAAGAATTCAGTgccttttaaatgtatttttttttttcttaaaaaaaaatcaactcttCATATAA

Function

symbol description
zbtb1 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm. Orthologous to human ZBTB1 (zinc finger and BTB domain containing 1).

NR:

description
zinc finger and BTB domain-containing protein 1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10488 ZBTB1; zinc finger and BTB domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948150.2 True 4144 mRNA 0.45 2 18606521 18615280

Neighbor

gene id symbol gene type direction distance location
vrtn vrtn coding downstream 26315 18575970 ~ 18580206 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding downstream 323841 18272076 ~ 18282680 (-)
chac1 chac1,LOC107721326,LOC107739370 coding downstream 354061 18250272 ~ 18252460 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding downstream 437426 18166379 ~ 18169095 (-)
zfyve1 zfyve1,LOC107721321 coding downstream 476028 18116550 ~ 18130493 (-)
si:dkey-1h6.8 NA coding upstream 12096 18627376 ~ 18633161 (-)
mthfd1a mthfd1 coding upstream 20003 18635283 ~ 18668970 (-)
kif26aa LOC108257555 coding upstream 113416 18728696 ~ 18823168 (-)
LOC117599718 NA coding upstream 216026 18831306 ~ 18832935 (-)
ppp4r4 ppp4r4,LOC107711657 coding upstream 242897 18858177 ~ 18893330 (-)
G297969 NA non-coding downstream 44687 18561597 ~ 18561834 (-)
G297966 NA non-coding downstream 56908 18549260 ~ 18549613 (-)
G297960 NA non-coding downstream 73681 18531678 ~ 18532840 (-)
G297954 NA non-coding downstream 95812 18510487 ~ 18510709 (-)
LOC117599783 NA non-coding downstream 180373 18371681 ~ 18426148 (-)
G298243 NA non-coding upstream 214254 18829534 ~ 18830291 (-)
G298286 NA non-coding upstream 387060 19002340 ~ 19066932 (-)
G298309 NA non-coding upstream 472821 19088101 ~ 19088655 (-)
G298349 NA non-coding upstream 601358 19216638 ~ 19217239 (-)
G298350 NA non-coding upstream 603837 19219117 ~ 19219681 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 500528 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 891249 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1099863 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1370392 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1559690 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 455180 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 759493 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 813911 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 856740 19472020 ~ 19473976 (-)
G298475 NA other upstream 975679 19590959 ~ 19591437 (-)

Expression


Co-expression Network