LOC117599783


Basic Information

Item Value
gene id LOC117599783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18371681 ~ 18426148 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580152.1
GAGAGTTGCAAAGGAAAGCATGGGAAAGAAAAGAATTGCAAAGAAAGCACCTTCAGTCTCCGAAAATACCAATACCAATATCACACGAAGGTGTAGAGAGAAACGTGAGACGTCCACGTGCACAGCCATGCAGAGCTTTTTCTCTGGAAAACAACTTCTCCATGTTGTCCTTCATGTTTCCATGTTACGATCATGTTTTCTCCATGTGATGTGGAAGAAACAGGACACACAGTAGGTGATTCTGATGGTTCAAAACAGGTAAAGAGAAGCCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580152.1 True 275 lncRNA 0.43 3 18371681 18426148

Neighbor

gene id symbol gene type direction distance location
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding downstream 89001 18272076 ~ 18282680 (-)
chac1 chac1,LOC107721326,LOC107739370 coding downstream 119221 18250272 ~ 18252460 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding downstream 202586 18166379 ~ 18169095 (-)
zfyve1 zfyve1,LOC107721321 coding downstream 241188 18116550 ~ 18130493 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 546281 17808298 ~ 17825400 (-)
vrtn vrtn coding upstream 149822 18575970 ~ 18580206 (-)
zbtb1 zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161 coding upstream 180373 18606521 ~ 18615280 (-)
si:dkey-1h6.8 NA coding upstream 201228 18627376 ~ 18633161 (-)
mthfd1a mthfd1 coding upstream 209135 18635283 ~ 18668970 (-)
kif26aa LOC108257555 coding upstream 302548 18728696 ~ 18823168 (-)
G297900 NA non-coding downstream 118119 18253362 ~ 18253562 (-)
G297887 NA non-coding downstream 136171 18234878 ~ 18235510 (-)
G297839 NA non-coding downstream 195075 18119168 ~ 18176606 (-)
LOC117599806 NA non-coding downstream 212385 18156713 ~ 18159296 (-)
G297724 NA non-coding downstream 496937 17874452 ~ 17874744 (-)
G297954 NA non-coding upstream 84339 18510487 ~ 18510709 (-)
G297960 NA non-coding upstream 105530 18531678 ~ 18532840 (-)
G297966 NA non-coding upstream 123112 18549260 ~ 18549613 (-)
G297969 NA non-coding upstream 135449 18561597 ~ 18561834 (-)
G298243 NA non-coding upstream 403386 18829534 ~ 18830291 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 265688 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 656409 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 865023 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1135552 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1324850 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 644312 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 948625 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1003043 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1045872 19472020 ~ 19473976 (-)
G298475 NA other upstream 1164811 19590959 ~ 19591437 (-)

Expression


Co-expression Network