vrtn (vrtn)


Basic Information

Item Value
gene id vrtn
gene name vrtn
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18575970 ~ 18580206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948147.2
CGCACCGCAAAtgggggtgtgtttgtgtgcgcgcgcgcggtgtgtgtgtgtgtgcgtgtgttttccAACTCTGAGACAAAAAGGCCCAATGTGGGTGATTGACAATTTCCTGGAGGAGGATCTTCTCGTTTCAAATGAACTCGGCTCGGAGTCGGATCAGTTTGTGAGTCATGGAGTAAAGTCGCATCCACACACTGCTCCATCTCTGCGCCTCGACtgctagcacacacacatttacacacacacacacacacacactcatacagacGCACACCTGAGGCACACAGGGAGCTGCTTTGTATTTAAGGCATGCTTCAGAGGAAAGAGGTGGTGCTCTCCGTCCTGGAGGAGCTCCAGGAGGCCACCGAGTCCATGGGCTTGGATTCCCTGATAAAAGTGGCCCTTGAGGTGGAACAAGTCCTCGCTCCTTTTAGCCTCCCGACAGCGCTGTGCTCAGAGATCTCCTCTTGGATGGGCATCGACGCTGTGGCTCACAGACTTTACCCAGCAGACGCCCCGGCTGGCCTGCTTCCTCTGGTCTGCAGAGGGGAGGGTAACCTGCTGTTTGACGCTGCCAGCATGCTTCTGGTGGGCTCCACGAGCCTGAGCTTGGAGCTACAGGTCAGGACGGTGGTGGAGATGCTCCTTTGGAAGCAGTACTACCTGTGTGGTATGATCGATTCCAAGGTCATGCTGCAGGCTTCCAGGTTTTCGCTCTGCGCTGAAGAATCACAGGACATGCTCAAGCTGCCTATGCAGGTTCTGGAGGCCATCTTTGATGCTGATGTCAAGGCTTCTTGCTTTCCGAGCTCTTTCGCGAACATGTGGCATGTCTACGCTCTGGCATCTGTCCTCCAGTGCAACATCTACTCTGTTTACCCAATGTATAACCTCAAGATCAGGCCCTATTTCAATCGCCTAATCCGTCCCAGAACGTTGCCCATGGACTCTGAGCCAATGACTCTCCACATTATGTGGTCTGGAGAGCTTGAGACTGGCTCCATTTTCAAACCACGCAACTTTGTGGCCTTAATTCATGCTGGTGATCTCAAAATTGGAAGTCCAGGGAGTGAGCAACGGTTGTCATCGGTTAAGTCCGTGGATCTGCTAAATGAGGATTCACAGCTTTCCTACTCCACCCTGAAAGACAAGTTCAACATCACGAAGAGCACCTTCTATCGCTGGAGGAGACAAAGCATGGAGTATCATAAGAAATCAGTCGCCAGATATGAAGCCAAACACTTTTTCCAGGCCTGCTACAAAGAAGGCAAGCTCATATCCCAGAACCAGTTCAGAGAGTTCTTCCCAGAAATCTCCAGATCCACATATTATGCCTGGAAACATGAACTCATGGCTACTGGAAGTATCGGTTCAGGAGGTTCCACCGGAGAGGTGAGCCCTGGAGATAGCAACGAGCAGGACTACTGGTCCTCTCCGGAGAGCATGAAGCAGCCTGTCCAGGAGACCTTCGCCAGCATGTTGGCACTCAAATCTGAGAAACTGGAAGGAGATCGATTCCAGAATGCAGCCCTGATGCAAGAAGCAAAGAAAAGCCTGCAGAACTGCATCGCCACCAACACATCGTTTCCCTACCGCATTTTCAAAAGAAGGTTCCCAGGAATCTCGAGATCAACTTACTACAATTGGAGGAGGGAAGCCTTGCTGTTCACACCGTTTAAAGATCTGTCAGGAAGCAGGGAAGAAAGCTCGGATCCGGATAAATTCCAGAATCCAAAAGAGAAGCTGTTGCCGCCAGGTTTGCTGGCGAGTCACAGAGTAATCCCGAGAGTCCGGCTCTCGAGGTGCAGTCAGAAGAGTCTCCGGCTGATCTACCTGCAGAAGAAGAAACTCAGAGAGGAAGCCAAAGCACATGTTCAGAAGTCCAAGATGTCGCTGTTCAAATTCAAGCTCAAGTTCCCATCAATATCGTCGTATTACTACTGGCTTTGGAGGTATAAGAAAGCTGGGGAAGAGCCTGATTTGAGTTTTGATGCCCATAAACCGGAAAATGTCGATGCCACGACAGATATCCTGAAGCAGGAGGAAACTCAGGAACGCTTTTCTTTTGACGGAAATGCCGAGTACTTAAACAACCATGTGATCAACACCAGCCCCGAATTCTCTCCATCGTACTATCCTCTATCTGACAAGACCAACAACAACGAGCAGATGTTCGTGATGGACGTCGTGGCGTTGGCGAACTTCAAGGCCAAGGCGAAACTGTTTCTCCAGCAGCGCTTTGAGGAGAAATCGTTCCCTACATTCAAAGAGTTCAGGTCTTACTTTCCTCTCACTCCACGCTCCACTTATTACATGTGGAAGAGGGCTTTGCATCACGGCGTGCCATTAGTTCATGGATAAATTTCTCTTTAAACGCCTCGGGTTAGCCATCACGGCTCAtagtttttacacatttctcatcACCTTGAGTCGGGCATCCAGGTCATTTCTGCTCCACCACAGTGTAATTGCAGTTCATGCATCTTAAttgtgttccttttttttttgttcccccACTTGACTTGACCACTTGGTTGCAGCTCAAGgacatttgcatgtgtgtgaaatcaGACAGTCTGTTTTACACGCCACTCAGCTCCTGATGGCCCTCAGGCAAAAGGCAGTTCAAAGCCACAGATATCAGGATTTCCAAATGACTCTCTTTTGTTTGGGTTTAGCCTttgctttaaattttaaattgactCCCATCATCCATTTCTGTTCATGTCtttcattttaactgttttGAATCCtcctttttttaacagaaaaaatcCTTTATTTTATCTAATCCCATCTCAAGAACAAATCTGTGACTTGTatatttcgttttttttttaattacacgtTTATTGTTtcgtctttttctttttttttttttttttttttttttttaacacacatatatatttttgtattgggTTTGATTTCACTTCGGATACAAGGTACGAAATCTGAATACAGGGTTGAAGCTGTGTTTTGCACATTTGTTCACTGTTCACTTTTGTAAAAGGAAAGTTCTGCTCTTCTTGATGCTGCTAAATTTTGGACAAAGATTTTCTTGTACACTTAAACGGGACGTATGATTTATCTATATAGCTTTTTGTTCTACTACCTATTTTGCGTAATGATTTGTGGAGCTCAGGAAGTTGTTGTTAAAGGAGTTTACATGGCGctcatgacatttatttaaaaacctaaTGTGCAGCTGaggattttttgttgttgttgttaaatttGGTTTAAATTCCTGAGATCAATGAGTGTGATGGATTATAATACAGGAAATAAATCATGTACTCAACCCA

Function

symbol description
vrtn Enables DNA-binding transcription repressor activity, RNA polymerase II-specific. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in chromatin. Is expressed in several structures, including blastodisc; margin; oocyte; tail bud; and yolk. Orthologous to human VRTN (vertebrae development associated).

NR:

description
PREDICTED: vertnin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948147.2 True 3308 mRNA 0.46 2 18575970 18580206

Neighbor

gene id symbol gene type direction distance location
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding downstream 293290 18272076 ~ 18282680 (-)
chac1 chac1,LOC107721326,LOC107739370 coding downstream 323510 18250272 ~ 18252460 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding downstream 406875 18166379 ~ 18169095 (-)
zfyve1 zfyve1,LOC107721321 coding downstream 445477 18116550 ~ 18130493 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 750570 17808298 ~ 17825400 (-)
zbtb1 zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161 coding upstream 26315 18606521 ~ 18615280 (-)
si:dkey-1h6.8 NA coding upstream 47170 18627376 ~ 18633161 (-)
mthfd1a mthfd1 coding upstream 55077 18635283 ~ 18668970 (-)
kif26aa LOC108257555 coding upstream 148490 18728696 ~ 18823168 (-)
LOC117599718 NA coding upstream 251100 18831306 ~ 18832935 (-)
G297969 NA non-coding downstream 14136 18561597 ~ 18561834 (-)
G297966 NA non-coding downstream 26357 18549260 ~ 18549613 (-)
G297960 NA non-coding downstream 43130 18531678 ~ 18532840 (-)
G297954 NA non-coding downstream 65261 18510487 ~ 18510709 (-)
LOC117599783 NA non-coding downstream 149822 18371681 ~ 18426148 (-)
G298243 NA non-coding upstream 249328 18829534 ~ 18830291 (-)
G298286 NA non-coding upstream 422134 19002340 ~ 19066932 (-)
G298309 NA non-coding upstream 507895 19088101 ~ 19088655 (-)
G298349 NA non-coding upstream 636432 19216638 ~ 19217239 (-)
G298350 NA non-coding upstream 638911 19219117 ~ 19219681 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 469977 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 860698 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1069312 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1339841 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1529139 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 490254 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 794567 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 848985 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 891814 19472020 ~ 19473976 (-)
G298475 NA other upstream 1010753 19590959 ~ 19591437 (-)

Expression


Co-expression Network