rhov (rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688)


Basic Information

Item Value
gene id rhov
gene name rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18166379 ~ 18169095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948100.2
tgtgtgtgctcagtgtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgagcctggGAGTAATGAGGTGACACTGACCACTTTACTCAGAGCTTCAGTGGTCTTCCAGAGCGGATTTTTAAGACTTCCGGTGTTGGACATGCCACCCCAAATGGATTATTTCTACCAAGAGGCGCGAGTTCCACCGGTGTGTGTGGAGCAGGGGCACGAGCACGCGCACGAGCACGCGCACGCGCCGGAGTCGGACCCGGAGCCGGTGATCAGCTGCATGCTGGTGGGAGATGGAGCTGTGGGGAAAACCAGCATGATCATCAGCTACACCAGCAACGGATACCCCACTGACTACAAACAGACCGCTTTCGACGTGTTTTCAGgaCAAGTCCAAGTTGATGGAGCACCTGTCCGGATCCAGCTGATGGACACAGCTGGACAGGAGGAGTTTGATGGCTTCCGCTCGCTGTCGTATGCCCACACGGACGTCTTCCTGCTCTGCTTCAGCGTCGTCAACCCGACGTCCTTCCAAAACATCACGAAGAAATGGATCCCCGAGATCCGCTCGTGCAACCCGACGTCTCCCATCATCCTGGTCGGGACTCAGTCAGACCTCCTGCTGGACGTCAACGTTCTGATAGACCTGGACCGGTACAAGGTGAAGCCCGTGCTCAGTTCTCGGGCTCGGAGCCTGGCTGAGAAGATCCGTGCTACGGAGTACGTGGAGTGCTCGGCTCTGACGCAGAAGAACCTGAAGGAGGCTTTTGACGCCGCCATTTTTGCAGCCATCAAACACAAGGCCAGGAAGGCCAAGAAGATGAGACTGTCAGACAGGCGCGCTAAAGCTTTTTCGAAATGCAGCTGGAAAAAATTCTTCTGCTTCATCTGATCCTGTGGGTCAAAGCGTGCACTggtgtgtaatttattatttattactttggACGTTTTTGGACATGAGATGTGTTATGATCTCAGCATTTTGGATTGCAGAACATTTCACATGATGCTACCAGGAATCGTTCCTGAATGATTACATCATGATGCACATGAGACAAGAGATAATGAGTGTGAGCAAATAAACAGAGCCGGAAATTCAACAGGGGAAGCACTGTGTTGGGGTGgtgcagttgattattttcctctaacagcacttcctgaagggatttattcctcttatacctcggCAATGTTCTTTCGAATGGAAGAACAAAacatcgtactttttatccatttaaagttgtggaatgtcttctaaacaaattagttcctgttcttacttacattatagcagtgataaacagtcattccctctccAGTGTCTctt

Function

symbol description
rhov Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within epiboly involved in gastrulation with mouth forming second and protein localization to adherens junction. Is expressed in several structures, including blastoderm; notochord; segmental plate; solid lens vesicle; and yolk syncytial layer. Orthologous to human RHOV (ras homolog family member V).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoV-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0071896 protein localization to adherens junction biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07866 RHOV, WRCH2; Ras homolog gene family, member V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948100.2 True 1316 mRNA 0.50 3 18166379 18169095

Neighbor

gene id symbol gene type direction distance location
zfyve1 zfyve1,LOC107721321 coding downstream 35886 18116550 ~ 18130493 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 340979 17808298 ~ 17825400 (-)
LOC113531908 NA coding downstream 390425 17768544 ~ 17775954 (-)
LOC113532304 LOC108257600 coding downstream 398868 17760619 ~ 17767511 (-)
gpr176 gpr176,LOC102785786 coding downstream 466819 17683997 ~ 17699560 (-)
chac1 chac1,LOC107721326,LOC107739370 coding upstream 81177 18250272 ~ 18252460 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding upstream 102981 18272076 ~ 18282680 (-)
vrtn vrtn coding upstream 406875 18575970 ~ 18580206 (-)
zbtb1 zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161 coding upstream 437426 18606521 ~ 18615280 (-)
si:dkey-1h6.8 NA coding upstream 458281 18627376 ~ 18633161 (-)
LOC117599806 NA non-coding downstream 7083 18156713 ~ 18159296 (-)
G297718 NA non-coding downstream 212908 17854885 ~ 17953471 (-)
G297724 NA non-coding downstream 291635 17874452 ~ 17874744 (-)
G297720 NA non-coding downstream 300728 17865288 ~ 17865651 (-)
G297712 NA non-coding downstream 323526 17841561 ~ 17842853 (-)
G297887 NA non-coding upstream 65783 18234878 ~ 18235510 (-)
G297900 NA non-coding upstream 84267 18253362 ~ 18253562 (-)
LOC117599783 NA non-coding upstream 202586 18371681 ~ 18426148 (-)
G297954 NA non-coding upstream 341392 18510487 ~ 18510709 (-)
G297960 NA non-coding upstream 362583 18531678 ~ 18532840 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 60386 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 451107 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 659721 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 930250 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1119548 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 901365 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1205678 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1260096 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1302925 19472020 ~ 19473976 (-)
G298475 NA other upstream 1421864 19590959 ~ 19591437 (-)

Expression


Co-expression Network