LOC117599806


Basic Information

Item Value
gene id LOC117599806
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18156713 ~ 18159296 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004580168.1
GGATAAGAGTATAATATGAGTAATATCGCTAACGGTGTATTAAACACAGCCGATTTACATGCAGGAGCTGTGATAAGTCTGATCCTGACGGAGCGTCTGGGAATGGATGGGTGGTGCTTTTCTCACACACGCTGATGTGACTCAGGGTGACTTTGGCACAATCATACAGTGACAAGTGAGGACAAGATGCTAACAGTAACCAGCGGGATCCCACGAGAAGAGAAAAGATTGAGTACTGCATTTCCCTCTACATGGGAGTCTGTCAGTCAACTCTGTCCCATCTTCAACTGGTCCACAATGCATCTGCTCGGCTCCTGACCGGCACCAAAAACAGGAACATCTCTCGTGTCTTCAGTGACCTTCCTTCACTGGCTGCCAGTCAGAGCTTTGAGATCATCTAATCAGCTACTTTTAACCATTCCTCGGATTCAGAAGAAGTTCAGAGGAGACCAGGGCTTTTCTGTCACTGCTCCGAGATTGTGGAACTGCGTGTCTTTTTCATAAAGACATCTCCTACCatggacatttttaaatccaatcTAAAAATGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004580168.1 True 549 lncRNA 0.46 3 18156713 18159296

Neighbor

gene id symbol gene type direction distance location
zfyve1 zfyve1,LOC107721321 coding downstream 26220 18116550 ~ 18130493 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 331313 17808298 ~ 17825400 (-)
LOC113531908 NA coding downstream 380759 17768544 ~ 17775954 (-)
LOC113532304 LOC108257600 coding downstream 389202 17760619 ~ 17767511 (-)
gpr176 gpr176,LOC102785786 coding downstream 457153 17683997 ~ 17699560 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding upstream 7083 18166379 ~ 18169095 (-)
chac1 chac1,LOC107721326,LOC107739370 coding upstream 90976 18250272 ~ 18252460 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding upstream 112780 18272076 ~ 18282680 (-)
vrtn vrtn coding upstream 416674 18575970 ~ 18580206 (-)
zbtb1 zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161 coding upstream 447225 18606521 ~ 18615280 (-)
G297718 NA non-coding downstream 203242 17854885 ~ 17953471 (-)
G297724 NA non-coding downstream 281969 17874452 ~ 17874744 (-)
G297720 NA non-coding downstream 291062 17865288 ~ 17865651 (-)
G297712 NA non-coding downstream 313860 17841561 ~ 17842853 (-)
G297670 NA non-coding downstream 396303 17705600 ~ 17760410 (-)
G297887 NA non-coding upstream 75582 18234878 ~ 18235510 (-)
G297900 NA non-coding upstream 94066 18253362 ~ 18253562 (-)
LOC117599783 NA non-coding upstream 212385 18371681 ~ 18426148 (-)
G297954 NA non-coding upstream 351191 18510487 ~ 18510709 (-)
G297960 NA non-coding upstream 372382 18531678 ~ 18532840 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 50720 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 441441 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 650055 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 920584 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1109882 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 911164 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1215477 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1269895 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1312724 19472020 ~ 19473976 (-)
G298475 NA other upstream 1431663 19590959 ~ 19591437 (-)

Expression


Co-expression Network