G297670


Basic Information

Item Value
gene id G297670
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17705600 ~ 17760410 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352484
GCACTTTAAAAGAAAGCTTTAATTAGAAATagttatatacacacacaaactgtagaattaaattaaactttatacaaatattaaaatactatCTTCACACCCACTGCAatgtacagagaaaaaaaaacaattgaaaaGGGTAAGATGAGATGGGTAACACCATTCAATGGTGTCAaggatttctgttttttttttttttttaaagtacaacAACCAAAAGAACAGAAAGTACAACTTTAGACCTGCAGCGAACTTCAGATATCAAagtcactgatttaaaaaaaaaaaagctttgggCAAGAAAACAgcatctgaaaaataaagaacaaagaacCCGACACCCTCTGAAAAAGCCGTAAGACTGTTAATGCAtaggaaataaaacataaaggcTGTAAGGAAAACTGAAGACGAATCAACACCGTGATGGAAGAAACATgattacaaaaataatgaaatgtacaagTCTTATTAAGGCGAAAGCTCGGCTCTGTCTTCTTTCCATTTtgcaaaggggaaaaaaaaataaaaataaaaaaaaataaaaaggatgtCTGACCACACAAACCTGACTCTCACTTTTCTGAAATCAGGTAAGCCAAAATATGAGGACAAGCAATGATGGATCTGTCCGTTATCAACTTGTCCAATGATCAGTAAGTAGTTACTGTGCAATTAAATGTACATGCAAAAATGCACATACATGACCAAGAGCTGCTTTTAGCTGgttgaaagaggaaaaaaaaaaaaactttctaacTCCTGACCAGCCACTGCAAAGCGTGAGAAAGTGCTCCACGCGGAAGCTGAAGCACATCTGGCTTGTTTTATACACATCCACCTCCTGGTGGGAAGCGAAACCTCTTTAAACATTTACCGCATACTGGCGGAGCGCAATCAGTGTCAGCGAGCGCTGCTGCTTATTGCCTTCTTAATTTTCAACTCTGGTCCCAGGAGACTCCTGCAGCGCATATTTATGTGTTCGCTTCACACCAAGACAGAGAGGCCGTGTTacgagacaaaaaaacaacaacaaaacaaaacactaaaatgtaaacTAGGTCTTGGTATGCGCTCATTTATCCGAGTTCAAGGACATGACTCTttaagctctctctctcagaactGGAAAGGTTTTCCAAAAAGTTCACTTTGGAGCATCCTTTAGtacattttcagtgatttttgtTCGTTTCTACATTAAGTAGATGATGTCATTTTCCTCTTATGTGAAGTGACgcgagtcaaatgaaaaccttgtgttattttgcattatttattggAAATAGGTGCCAGAAAAGCGTAtcgtttttttcttcataatctTCATTTCGTTGGATGAAACTCTTCCAGCGCTTAACAAGTGTTCAGATTCCTCTAGAAACAAAACTCGATTCGGTTCTAATTTATTTACAAGGTTTACAAGGTTATTTAGGTTTATAAGGTTTTCATTCGACTCACTCCCGTAGaatcttttttaatatttacctTTAAACTTCATGCAATAATGAATCAGCAgttaaaaacagagagagatggcagGATACCACA
>TU352485
GCACTTTAAAAGAAAGCTTTAATTAGAAATagttatatacacacacaaactgtagaattaaattaaactttatacaaatattaaaatactatCTTCACACCCACTGCAatgtacagagaaaaaaaaacaattgaaaaGGGTAAGATGAGATGGGTAACACCATTCAATGGTGTCAaggatttctgttttttttttttttttaaagtacaacAACCAAAAGAACAGAAAGTACAACTTTAGACCTGCAGCGAACTTCAGATATCAAagtcactgatttaaaaaaaaaaaagctttgggCAAGAAAACAgcatctgaaaaataaagaacaaagaacCCGACACCCTCTGAAAAAGCCGTAAGACTGTTAATGCAtaggaaataaaacataaaggcTGTAAGGAAAACTGAAGACGAATCAACACCGTGATGGAAGAAACATgattacaaaaataatgaaatgtacaagTCTTATTAAGGCGAAAGCTCGGCTCTGTCTTCTTTCCATTTtgcaaaggggaaaaaaaaataaaaataaaaaaaaataaaaaggatgtCTGACCACACAAACCTGACTCTCACTTTTCTGAAATCAGGTAAGCCAAAATATGAGGACAAGCAATGATGGATCTGTCCGTTATCAACTTGTCCAATGATCAGTAAGTAGTTACTGTGCAATTAAATGTACATGCAAAAATGCACATACATGACCAAGAGCTGCTTTTAGCTGgttgaaagaggaaaaaaaaaaaaaaaaaagcttacttTTAGAGGGATTTgttcaggggtggacaaatcataaatttaataGCAATGACAGCACAGAAAGTCTAATTAAGTGTAATTTAACTCAAAAGCGTGACGATATAATTACGTGTGTTGACACAGACGATGGAAAAGaagcaattttaatttttaatcctCTCCTGATCATGTCTTTGGCTAACATTTATGATGCAGTATTCTGTCATCGCATGTAAAAAGACGTTATTTAATCTAGCTAGCGTCTTCGTTTTCACTTGATGACTgcgcattattattattattttttttttgcactccaCTGTTTTCTGCTCCGTTGTCCTCGTTTCTACATTCTGGAAATATTGTCTAGCATCCACTCAAGCTAATTATCGtgcatagtaaaaaaaaaatagctccTATCAATAGTCACTGGGTTTGTGCGTAGTGCAGCAGGTGACGAGATTCGGAAAAGAGTAGCGTTGAGTTGCTTTTGATCCAACTGGAACGTGTTgcgtttaaataaaaataacaatgaaatGAACGATGAAAcataataatgttttcttttgcagaAGGCAGACGTAATAAGCTCCATATTTTAATTTCggtcaaaaatacaccaaaagatcATTCTCTAATCACTGGACCCCCCCTTGAATTATTCCTCGTCAGGGTTTCAGGTTTGGGAAGTAgaatttttctgctttttttaggattttgtaataaaaaaaaagaaccctgAAAGCTTGGCACCTAAACTAGTGATCTGTCCACCCCTTCACATGAGTGTTGCTAAATTCAGCTTTCTTTCTGGCGTAATCTTGTTTATTTAGtacacctcatacacacacagctggacaAACAGAACGACCCAAAGACATTTAAAAGCAAACTACGACGTGGTCAGTTATCCGACAGCAGGGCACTTTATGGAAGTCCCCTACATGCCCCATCACCCGTCTGGGCTCCACGCCGCCGTGGAGTCAAGTGGTCACTTTTGGAGGAGAACCGAAAGCTCATGCACACGCACAGGTTGATGCTTGGAGGAGAGTTGaagagttttttaaaaaaaacttaaacagtgttgattatttaaaaTCCTCACTTTAAGCAGTGCACATAGCTGAGAGAGGAAATTCAGATGCGATTTGATAGAGGACACATTTTGTATATGTCTACACTCTGAGTTGCTCCTTCTGCAGCTCGCTCGGTGTAGGTCAGATCTTCTGAACGAGTAGTTAGCGTGTCTGTAAGGGCTAAACTCTATTAGAATAAGCATTGTTATTTCAAAATGCAGCAGTCAGACCTTGAATGAAATCTCCTAGTAAATAAAGTGCCGTCTTAGACATACTAATCAGGCTTGGTGTATCAATCTCTTAGTaaagttttatgtaaataattttgtatgCAAAACTGAGCAAATCCTTGTTTAATGCTGTTTGTCCCAATGTGATTTGAACCTCATTATGGACTATGATGATGATCTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352484 False 1551 lncRNA 0.36 2 17734623 17760410
TU352485 True 2231 lncRNA 0.36 2 17705600 17760410

Neighbor

gene id symbol gene type direction distance location
gpr176 gpr176,LOC102785786 coding downstream 6040 17683997 ~ 17699560 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding downstream 39472 17608591 ~ 17666128 (-)
akap12b akap12 coding downstream 104840 17538910 ~ 17600760 (-)
armt1 armt1 coding downstream 184889 17512447 ~ 17520711 (-)
myct1a myct1 coding downstream 445734 17256381 ~ 17259866 (-)
LOC113532304 LOC108257600 coding upstream 209 17760619 ~ 17767511 (-)
LOC113531908 NA coding upstream 8134 17768544 ~ 17775954 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding upstream 47888 17808298 ~ 17825400 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 356140 18116550 ~ 18130493 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding upstream 405969 18166379 ~ 18169095 (-)
G297465 NA non-coding downstream 48789 17656225 ~ 17656811 (-)
G297442 NA non-coding downstream 222713 17482324 ~ 17482887 (-)
LOC113531886 NA non-coding downstream 284148 17415966 ~ 17421452 (-)
G297053 NA non-coding downstream 623486 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 639172 17065682 ~ 17066428 (-)
G297712 NA non-coding upstream 81151 17841561 ~ 17842853 (-)
G297718 NA non-coding upstream 94475 17854885 ~ 17953471 (-)
G297720 NA non-coding upstream 104878 17865288 ~ 17865651 (-)
G297724 NA non-coding upstream 114042 17874452 ~ 17874744 (-)
G297839 NA non-coding upstream 358758 18119168 ~ 18176606 (-)
esr1 esr1 other downstream 198942 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 469471 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 658769 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 1147673 16555103 ~ 16557927 (-)
pln NA other downstream 1562984 16134134 ~ 16142616 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 312135 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1310050 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1614363 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1668781 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1711610 19472020 ~ 19473976 (-)

Expression


Co-expression Network