myct1a (myct1)


Basic Information

Item Value
gene id myct1a
gene name myct1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17256381 ~ 17259866 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922848.2
aagagagagcaggGAGTGAAGGAGGAATCACCAGGAGGAATATACTGGAGGCTGGAGGTGTGAGGGAGCTGGAGGACCAGACTGAATGTGCATCTCCGCTCCCTTCTCCTCGGTCAGTCCAGACGGAGCGATGGCTGATAACAGCACTCATCCCATCCTGGATATACTTCAGACCTTCGGCCCGAGAGACTTGATCCTTGCGTTCTGTCTGTCCATGGTGGTGGGACTCCTGCTGGGCGCTTTGGTGTACGTGGTCCTCACTTGGATGGGGCGTCGTCGTGCATCTGCCACCATCACCCGCATGCCGTCACCGCGCTCCTCGGGCCGCCCTTCGTCCCCTCGCACTCTCCCCGCCTTCAGCCGCCAGTGCAGTGCCTACGACCGTCGCAGCAACAACAGCCTGGCCAGCGCTGCCTTCTCCTTCCATCGGCAAACCTCGTCTTCACCCATCGATCACCCCGACCTGCTGGGTCGCAAGGACAGCTTCAGGGCCTCCACCTTCCACCCACTGATCCAGTGCAGCCAGATCGCACGTGAAGCCGAGGAAGGAAACCACGGCACCCTGACCAGCAACCCCGGAGCCACCAGCACTAACAGCACAGCCGGCTCCATGGTCACTCCACCAAGGCCCAGGCCCAGACCGGACTCCTTCTGGGGCAACAGCAGTGTGAGAGGCCTCAGTGCCACACAGACTCCTCCACCGGCGTATGACAGCATCATACGCGCCTATCAGGAGACCTGCACTTGAGGGATGAGGATAAAATAAGACTTGATGATCTCTTGGGGAATTGGGAGCAGCTTTACAATGCACAGTGTGAaaacaaaattgtaatttttgttaCTGTCATTGAGGTAGATGTACAGAGAGAACAACTGTATGATATGATTACTGACACTTAAATTGGACAAGCCACTATTACGGAATATCAGTCACATTCATTACCAGACTGTGTAATGACTGAACGCTGATGACTCAGTATGCATGGAGTcattgttattaaaatgtgtcCATTCACAGTATTTTGTTgatatcattaataaaaaactGATTCAGACA

Function

symbol description
myct1 Predicted to act upstream of or within hematopoietic stem cell homeostasis. Located in nucleoplasm.

NR:

description
PREDICTED: myc target protein 1

GO:

id name namespace
GO:0035162 embryonic hemopoiesis biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922848.2 True 1057 mRNA 0.54 2 17256381 17259866

Neighbor

gene id symbol gene type direction distance location
serac1 serac1,LOC107555766 coding downstream 7460 17237824 ~ 17248921 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding downstream 24283 17216213 ~ 17232098 (-)
capn3b LOC108257553,LOC108424491 coding downstream 62734 17168187 ~ 17193647 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 103426 17149788 ~ 17152955 (-)
mideasa LOC108258070 coding downstream 142730 17092570 ~ 17113651 (-)
armt1 armt1 coding upstream 252581 17512447 ~ 17520711 (-)
akap12b akap12 coding upstream 279044 17538910 ~ 17600760 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding upstream 348725 17608591 ~ 17666128 (-)
gpr176 gpr176,LOC102785786 coding upstream 424131 17683997 ~ 17699560 (-)
LOC113532304 LOC108257600 coding upstream 500753 17760619 ~ 17767511 (-)
G297053 NA non-coding downstream 174267 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 189953 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 191996 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 201378 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 205742 17050395 ~ 17050639 (-)
LOC113531886 NA non-coding upstream 156100 17415966 ~ 17421452 (-)
G297442 NA non-coding upstream 222458 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 396359 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 445734 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 581695 17841561 ~ 17842853 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 20252 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 209550 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 698454 16555103 ~ 16557927 (-)
pln NA other downstream 1113765 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1774020 15463081 ~ 15482361 (-)
esr1 esr1 other upstream 225718 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 447420 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 812679 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1810594 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 2114907 19374773 ~ 19410374 (-)

Expression


Co-expression Network