serac1 (serac1,LOC107555766)


Basic Information

Item Value
gene id serac1
gene name serac1,LOC107555766
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17237824 ~ 17248921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034313421.1
TTTACGGTAATTGCGTAGCTCAATATGTCGGAAGCTTCCTGTTTATTGTGGGTTTTGACTGCAACTGTCTTAAATGAAAACTGGGAAGAGATTTCAATAAATTATTCCTAATATTCAAATTTCTATAAGACAAGATGTCGGTCACCGCTTTGCGCCTGATCCCATGTCGGAGGCTGAGCTCGACAGGTCCAGGCCTGAAGAAAGTCATCCCATGGAAAGCCTTTCggAAAATCGCTAAAGTAACTGGAGCCATTGTACTGGGTGGCTGTGTTTTCATCACATACGAGGTCGTCACGCTGAACCAGGCGGTCACCATCGACACTCAGGCTATTCTCCAAGAGAAACAGAAGTCGTATATCTACCTGACCCCCATCACTAAGGTAGAACAGGAGACCCTTGGCACCAATCTTACCTATAAAGCCAGGAAGGAGCTTCATAAAGCAGCAAGAAAACTTATAGAAATTTCATCCCGAGTCCTCCACCGTCCCCTGGATGagcaccTAAGCCATCTGGATGCAGATCCTCGTGAGTTGGCTCTGTGGATGTTGCTGAAGAGAACCCGCTCCTCCAGTCGGTCAGAGCGCCTGCAGGCCGTACAGGACCTGGCACAGAGTCACTGGcagggtTATCAGTACCAGACAGCGGCTCAGTCTATAGACCAGCGCACGGCTATAGGTCTGGCTCGGACCCCGAACGTAGACCTGCGCTTCTTCCTTTCCCCACCCGTGCTGCCTAAACTGGaggatGAATTTCTAATAGAGGACGGTTTGAGGCAGCTGCTGGCCTCTCTGCCCCAGTCAGAGGTGGATCAGTGTGTGCAGTATTTCACCTCACTGGCACTGAGAGAGAGCACTCAGTCCCTCGCCTCTCAACGgGGAGGGTTGTGGTGTTTCGGGGGAAATGGACTGCCCTATGCCCAGAGCCTCACCTCCATCCCCTCTGAGAAGGTGGAGTCTTTCTGCCTGCAGGCCCTCGTACAGCACTCaaagGTCCTGAGTCATTGTGATCACATAGTGGCCAACAGAGGACTGCAGCTTTTACAGAGAGTCTACCAGCTTCGACGGGATTCGCAGAAGATTCAGCGCAACATCGTGCGCATCATCGGGAACCTGGCACTGAACGAgcttacacacagacatagtGCAGTCAGtgGTTGGTTGCCTGTCCTGGCTGAGATGGCGCGGTCTCCTCACATCATACAGGCGTCCCACGCTGCCCGTGCTTTAGCCAACCTGGACCGAGACACAGAGGTGCAGAAGTACCAGGACGGAGTTTATGTTTTGCATCCACAGTGTCGCACCAGCCAGCCCATGAAAGCGGATGTTCTGTTTGTGCACGGCCTTCTGGGAGCTGCTTTCAAAACATGGCGACAGAAAGACTGCGATCTGACAGAAgttgaaaaatctgcaggaatacATGAGGATTACACCGAGTGCTGGCCTAAGTCGTGGTTAGCAGCCGACTGTCCCAACCTCAGAATCCTGTCTGTAGAGTACGACACGCATCTGAGCGACTGGAGGGCCAAGTGTCCCGCTGAAAACCAGAgGAAGTCTTTAGCGTATCGCAGTGGAGAGCTGCTGAAGAAGCTGAAAGCTGCAGGAGTAGGTGACCGGCCTGTGGTTTGGGTGGCGCACAGTATGGGAGGCTTGCTGGTGAAAAAGATGCTCGTAGACGCCTCTAAGGATCCCGAGCTGAGCTCCTTGGTCAAGAACACAAAGGGCGTGTTGTTCTACAGCGTTCCTCACCGCGGCACCTTCATGGCCGAGTACTCCGTAAACGTGCGCTATCTCCTGTTTCCCTCTATAGAAGTCAGAGAGCTTTGCAAAGACTCTCCAGCTTTACGAGACCTGAACGAGAATTTCCTCAACATCGCAAaagacaaagagttcaagatcCTGAGCTTTGCTGAAACTCTGCCCACGTCCGTTGGCCCGATGATAAACATATTAGTGGTTCCTGCCGTGACAGCAGATCTGGGGATTGGAGATCTAATAGAAGTGGCTGTCGATCATCTAAACATCTGCAAACCCGAGAAGAAGGACACGTTTCTCTACAAACGGAGCTTGCAGTTTATTCAGGATGCTCTTGGTGGACAGATAATCAGCTGAATGTTTGTGTCAACGTCTTTCTCATCTCATCTTCAGGATTTTTCGGCTCTGGAAATGATCCAGGAGTTAACAGGAAGTCATTTGGATACAtcagaaaatgcaaaatgcatatttttttaaaaaaaaactaacacatGTGTTGAACATAGAAGAGTATCTTTAAACACTTCTCCTACTAATTGGTTTGGATTCATGTTGTACACTGATACTGTATGACCACTACACGTAGTCAATTTCATTTAAACTCTTTGCCAATGTCCTGTAAcggtaattatttatttttactgacaCTTCCTAGCACATTGTTGCAATACTAAGAACCAGGTGGAGAATCACGGTACTACTGCTGACTTCATGTTTGGTGCCACTACCTCAAAAATATACTGATGGATTTTAATTATACAAACAGTACTTTTGTGTACATCAGTGTTAGGTGTTTAAATTATTAGAGTACGAGTTCTTAATGAGGATTTAAGGGTTACATTTGTGCCAAAATGTATCGCCAGCACTTAAGCACAACAAATAAAGTGGCTGTGTGTCATCTGATGGGTTAA

Function

symbol description
serac1 Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in endoplasmic reticulum; membrane; and mitochondrion. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome. Orthologous to human SERAC1 (serine active site containing 1).

NR:

description
protein SERAC1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K23504 SERAC1; protein SERAC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034313421.1 True 2662 mRNA 0.48 18 17237824 17248921

Neighbor

gene id symbol gene type direction distance location
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding downstream 5726 17216213 ~ 17232098 (-)
capn3b LOC108257553,LOC108424491 coding downstream 44177 17168187 ~ 17193647 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 84869 17149788 ~ 17152955 (-)
mideasa LOC108258070 coding downstream 124173 17092570 ~ 17113651 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding downstream 157015 17069425 ~ 17080809 (-)
myct1a myct1 coding upstream 7460 17256381 ~ 17259866 (-)
armt1 armt1 coding upstream 263526 17512447 ~ 17520711 (-)
akap12b akap12 coding upstream 289989 17538910 ~ 17600760 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding upstream 359670 17608591 ~ 17666128 (-)
gpr176 gpr176,LOC102785786 coding upstream 435076 17683997 ~ 17699560 (-)
G297053 NA non-coding downstream 155710 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 171396 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 173439 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 182821 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 187185 17050395 ~ 17050639 (-)
LOC113531886 NA non-coding upstream 167045 17415966 ~ 17421452 (-)
G297442 NA non-coding upstream 233403 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 407304 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 456679 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 592640 17841561 ~ 17842853 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1695 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 190993 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 679897 16555103 ~ 16557927 (-)
pln NA other downstream 1095208 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1755463 15463081 ~ 15482361 (-)
esr1 esr1 other upstream 236663 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 458365 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 823624 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1821539 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 2125852 19374773 ~ 19410374 (-)

Expression


Co-expression Network