RNA id: XM_034313421.1


Basic Information

Item Value
RNA id XM_034313421.1
length 2662
RNA type mRNA
GC content 0.48
exon number 18
gene id serac1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17237824 ~ 17248921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTACGGTAATTGCGTAGCTCAATATGTCGGAAGCTTCCTGTTTATTGTGGGTTTTGACTGCAACTGTCTTAAATGAAAACTGGGAAGAGATTTCAATAAATTATTCCTAATATTCAAATTTCTATAAGACAAGATGTCGGTCACCGCTTTGCGCCTGATCCCATGTCGGAGGCTGAGCTCGACAGGTCCAGGCCTGAAGAAAGTCATCCCATGGAAAGCCTTTCggAAAATCGCTAAAGTAACTGGAGCCATTGTACTGGGTGGCTGTGTTTTCATCACATACGAGGTCGTCACGCTGAACCAGGCGGTCACCATCGACACTCAGGCTATTCTCCAAGAGAAACAGAAGTCGTATATCTACCTGACCCCCATCACTAAGGTAGAACAGGAGACCCTTGGCACCAATCTTACCTATAAAGCCAGGAAGGAGCTTCATAAAGCAGCAAGAAAACTTATAGAAATTTCATCCCGAGTCCTCCACCGTCCCCTGGATGagcaccTAAGCCATCTGGATGCAGATCCTCGTGAGTTGGCTCTGTGGATGTTGCTGAAGAGAACCCGCTCCTCCAGTCGGTCAGAGCGCCTGCAGGCCGTACAGGACCTGGCACAGAGTCACTGGcagggtTATCAGTACCAGACAGCGGCTCAGTCTATAGACCAGCGCACGGCTATAGGTCTGGCTCGGACCCCGAACGTAGACCTGCGCTTCTTCCTTTCCCCACCCGTGCTGCCTAAACTGGaggatGAATTTCTAATAGAGGACGGTTTGAGGCAGCTGCTGGCCTCTCTGCCCCAGTCAGAGGTGGATCAGTGTGTGCAGTATTTCACCTCACTGGCACTGAGAGAGAGCACTCAGTCCCTCGCCTCTCAACGgGGAGGGTTGTGGTGTTTCGGGGGAAATGGACTGCCCTATGCCCAGAGCCTCACCTCCATCCCCTCTGAGAAGGTGGAGTCTTTCTGCCTGCAGGCCCTCGTACAGCACTCaaagGTCCTGAGTCATTGTGATCACATAGTGGCCAACAGAGGACTGCAGCTTTTACAGAGAGTCTACCAGCTTCGACGGGATTCGCAGAAGATTCAGCGCAACATCGTGCGCATCATCGGGAACCTGGCACTGAACGAgcttacacacagacatagtGCAGTCAGtgGTTGGTTGCCTGTCCTGGCTGAGATGGCGCGGTCTCCTCACATCATACAGGCGTCCCACGCTGCCCGTGCTTTAGCCAACCTGGACCGAGACACAGAGGTGCAGAAGTACCAGGACGGAGTTTATGTTTTGCATCCACAGTGTCGCACCAGCCAGCCCATGAAAGCGGATGTTCTGTTTGTGCACGGCCTTCTGGGAGCTGCTTTCAAAACATGGCGACAGAAAGACTGCGATCTGACAGAAgttgaaaaatctgcaggaatacATGAGGATTACACCGAGTGCTGGCCTAAGTCGTGGTTAGCAGCCGACTGTCCCAACCTCAGAATCCTGTCTGTAGAGTACGACACGCATCTGAGCGACTGGAGGGCCAAGTGTCCCGCTGAAAACCAGAgGAAGTCTTTAGCGTATCGCAGTGGAGAGCTGCTGAAGAAGCTGAAAGCTGCAGGAGTAGGTGACCGGCCTGTGGTTTGGGTGGCGCACAGTATGGGAGGCTTGCTGGTGAAAAAGATGCTCGTAGACGCCTCTAAGGATCCCGAGCTGAGCTCCTTGGTCAAGAACACAAAGGGCGTGTTGTTCTACAGCGTTCCTCACCGCGGCACCTTCATGGCCGAGTACTCCGTAAACGTGCGCTATCTCCTGTTTCCCTCTATAGAAGTCAGAGAGCTTTGCAAAGACTCTCCAGCTTTACGAGACCTGAACGAGAATTTCCTCAACATCGCAAaagacaaagagttcaagatcCTGAGCTTTGCTGAAACTCTGCCCACGTCCGTTGGCCCGATGATAAACATATTAGTGGTTCCTGCCGTGACAGCAGATCTGGGGATTGGAGATCTAATAGAAGTGGCTGTCGATCATCTAAACATCTGCAAACCCGAGAAGAAGGACACGTTTCTCTACAAACGGAGCTTGCAGTTTATTCAGGATGCTCTTGGTGGACAGATAATCAGCTGAATGTTTGTGTCAACGTCTTTCTCATCTCATCTTCAGGATTTTTCGGCTCTGGAAATGATCCAGGAGTTAACAGGAAGTCATTTGGATACAtcagaaaatgcaaaatgcatatttttttaaaaaaaaactaacacatGTGTTGAACATAGAAGAGTATCTTTAAACACTTCTCCTACTAATTGGTTTGGATTCATGTTGTACACTGATACTGTATGACCACTACACGTAGTCAATTTCATTTAAACTCTTTGCCAATGTCCTGTAAcggtaattatttatttttactgacaCTTCCTAGCACATTGTTGCAATACTAAGAACCAGGTGGAGAATCACGGTACTACTGCTGACTTCATGTTTGGTGCCACTACCTCAAAAATATACTGATGGATTTTAATTATACAAACAGTACTTTTGTGTACATCAGTGTTAGGTGTTTAAATTATTAGAGTACGAGTTCTTAATGAGGATTTAAGGGTTACATTTGTGCCAAAATGTATCGCCAGCACTTAAGCACAACAAATAAAGTGGCTGTGTGTCATCTGATGGGTTAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006505 GPI anchor metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K23504 SERAC1; protein SERAC1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352043 lncRNA downstream 1713 17233977 ~ 17236111 (-) True gtf2h5
TU351753 lncRNA downstream 155710 17081872 ~ 17082114 (-) True G297053
TU351752 lncRNA downstream 171396 17065682 ~ 17066428 (-) True G297052
TU351750 lncRNA downstream 173439 17064166 ~ 17064385 (-) True G297050
TU351749 lncRNA downstream 182821 17054364 ~ 17055003 (-) True G297049
XR_003403302.2 lncRNA upstream 167045 17415966 ~ 17421452 (-) True LOC113531886
TU352197 lncRNA upstream 233403 17482324 ~ 17482887 (-) True G297442
TU352201 lncRNA upstream 256985 17505906 ~ 17506658 (-) False esr1
TU352232 lncRNA upstream 407304 17656225 ~ 17656811 (-) True G297465
TU352485 lncRNA upstream 456679 17705600 ~ 17760410 (-) True G297670
XM_026923294.2 mRNA downstream 1695 17234679 ~ 17236129 (-) False gtf2h5
XM_034313484.1 mRNA downstream 1811 17234679 ~ 17236013 (-) False gtf2h5
XM_034313483.1 mRNA downstream 2577 17234679 ~ 17235247 (-) False gtf2h5
XM_026922841.2 mRNA downstream 5726 17216213 ~ 17232098 (-) True si:dkey-12h9.6
XM_026923789.2 mRNA downstream 44177 17168187 ~ 17193647 (-) True capn3b
XM_026922848.2 mRNA upstream 7460 17256381 ~ 17259866 (-) True myct1a
XM_026923362.2 mRNA upstream 236663 17485584 ~ 17506182 (-) True esr1
XM_026922726.2 mRNA upstream 263526 17512447 ~ 17520711 (-) True armt1
XM_026923781.2 mRNA upstream 289989 17538910 ~ 17600760 (-) True akap12b
XM_026923693.2 mRNA upstream 359670 17608591 ~ 17666128 (-) True mthfd1l
TU351727 other downstream 191014 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 679897 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 679897 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 730911 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 1095220 16134167 ~ 16142604 (-) False pln
TU352481 other upstream 458365 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 826441 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 1829083 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2016906 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 2142078 19390999 ~ 19391487 (-) False LOC113525604

Expression Profile