trnal-cag_16


Basic Information

Item Value
gene id trnal-cag_16
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16506831 ~ 16506913 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-cag_16
GTCAGGATGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag_16 True 83 tRNA 0.63 1 16506831 16506913

Neighbor

gene id symbol gene type direction distance location
rfx6 rfx6,LOC102193265,LOC102778618 coding downstream 18262 16471442 ~ 16488569 (-)
vgll2a vgll2,LOC107678819 coding downstream 78459 16420761 ~ 16428372 (-)
dcbld1 dcbld1 coding downstream 108571 16362102 ~ 16398260 (-)
LOC113531921 LOC108257860 coding downstream 172760 16327581 ~ 16334071 (-)
nus1 nus1,LOC107549681,LOC107736830 coding downstream 179966 16313611 ~ 16326865 (-)
plg plg coding upstream 63500 16570413 ~ 16588520 (-)
gpr31 gpr31 coding upstream 90203 16597116 ~ 16600571 (-)
ttll2 ttll2 coding upstream 111561 16618474 ~ 16622145 (-)
LOC113531776 unc93a,LOC108257541,LOC108257560 coding upstream 118706 16625619 ~ 16644757 (-)
LOC113532136 LOC108257755 coding upstream 302965 16809878 ~ 16812493 (-)
LOC117599726 NA non-coding downstream 164761 16339082 ~ 16342070 (-)
G296734 NA non-coding downstream 340986 16157334 ~ 16165845 (-)
G296733 NA non-coding downstream 341543 16163491 ~ 16165288 (-)
G296731 NA non-coding downstream 350858 16152334 ~ 16155973 (-)
G296237 NA non-coding downstream 1183421 15322991 ~ 15323410 (-)
G296823 NA non-coding upstream 85000 16591913 ~ 16592120 (-)
G296835 NA non-coding upstream 107627 16614540 ~ 16614771 (-)
G296965 NA non-coding upstream 234328 16741241 ~ 16807322 (-)
G296993 NA non-coding upstream 338202 16845115 ~ 16846008 (-)
G296994 NA non-coding upstream 339208 16846121 ~ 16847214 (-)
pln NA other downstream 364215 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1024470 15463081 ~ 15482361 (-)
pkib pkib other downstream 1202534 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1734796 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 1910436 14596313 ~ 14596395 (-)
G296802 igf2r other upstream 48190 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 536253 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 727064 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 978671 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 1200373 17707286 ~ 17715272 (-)

Expression


Co-expression Network