pkib (pkib)


Basic Information

Item Value
gene id pkib
gene name pkib
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15273854 ~ 15304297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350820
GCGCGCGAGAGACCGAGAGACAATCCCGAGCAGGAAGGATGCTCTGAATGCACGGACTTTTCCCTCTGCTGATGGAAAAACCTTTCGTGTAGCCTGCTCGATGATAATGTGAAATGCAAGAGCAGAGATGACTGATGTGGAGACTGTTGTCACTGACTTCGCTGCCACAGGAAGGACTGGCCGACGAAACGCCATGCCAGATATTTTAGGTTCCAACGCAGGAACCGAAGCGGCAGACCTTCCAAACAAATTAGCTGATCTTGCTGTTGGAGATGATGCTGAGCAAGGAGGAGAAGGCTCATCCTCCACTGACACGGCCAAGGACACTGCAGGGGGAAAGGACCAGGCAGAGGGAACATAACTTAACCCATTACAGCCTGAACCAAACTGAACAGCAAAGTTAACAGAGACAGCACCACAAACAATCTCTCCTTTTGCCTCCATGACCAAACTACTGTTATGGTTGCAGTCTGTGCTATGCAAGATCAGCTTCACTGGAAGGTATTACTCTGATGTAGGCTGATGGAGCAGCACACCCAGCTTCTCTTGGAAATCCTTCTGTTTTGACAGAGTCAATAAATTACCCACCTTTGTGATGTTCATGTGGCACAAAGAATAATGGCTTCTGTATGTCGTAGAGAGAACCATATGACATTATTTTCCTAGTTTAAAAAAGGA
>XM_026923622.2
CCCCAGTCTCCTCTATCGATATCGGTATCggtttcagtatcggtatcgGAATGCTAGCCCTGGTATCGCTGGGTATCGAATCGACAAGTAATTCAGTGTTTCCTGGTTACCGTTTCCAATGAAGCGCGAATGCGTGACGTCGCAGCAGATGCACGCGGACTGGAATTAACGTTAACTGTCCGAGCGCGCGAGAGACCGAGAGACAATCCCGAGCAGGAAGGATGCTCTGAATGCACGGACTTTTCCCTCTGCTGATGGAAAAACCTTTCGTGTAGCCTGCTCGATGATAATGTGAAATGCAAGAGCAGAGATGACTGATGTGGAGACTGTTGTCACTGACTTCGCTGCCACAGGAAGGACTGGCCGACGAAACGCCATGCCAGATATTTTAGGTTCCAACGCAGGAACCGAAGCGGCAGACCTTCCAAACAAATTAGCTGATCTTGCTGTTGGAGATGATGCTGAGCAAGGAGGAGAAGGCTCATCCTCCACTGACACGGCCAAGGACACTGCAGGGGGAAAGGACCAGGCAGAGGGAACATAACTTAACCCATTACAGCCTGAACCAAACTGAACAGCAAAGTTAACAGAGACAGCACCACAAACAATCTCTCCTTTTGCCTCCATGACCAAACTACTGTTATGGTTGCAGTCTGTGCTATGCAAGATCAGCTTCACTGGAAGGTATTACTCTGATGTAGGCTGATGGAGCAGCACACCCAGCTTCTCTTGGAAATCCTTCTGTTTTGACAGAGTCAATAAATTACCCACCTTTGTGATGTTCATGTGGCACAAAGAATAATGGCTTCTGTATGTCGTAGAGAGAACCATATGACATTATTTTCCTAGTTTAAAAAAGGACcacttggtttattttttttaattgtcactAAACTAAAAGAATGTCTAGTTTATATACAAAAATAGCATTCCATTTGGTTATGTAAGTATAATTTAAACCGTAAGAATGTGGTTGGTCATCtattatgtgatttttattttctatgaaTATATATTGTACACTTTTTCTGAGTGCTTTTTGTCAAAGtcaaaatgagtaaatatgGAACTGTCATTTATGTATCTTGGCTTTTTATTGTCCTTATCAACGGCTGTTGAATGTTACACTTCATGTCATTGTATTGCAAGTATTGTAGGCATCAATTTTCACTGATGTGGTGATGACgactttattttttcctctgtgcTCTCAAAAGCAAATCAAAAGAAAATCCATTCATGAAGATGGTACATTCGAATTAATCTTTCAATATCATTATGCTttgcaaaattaaatgtattattttaaccACATTGTTGTCTGTTGCACCAATGTACCAAATGCTGgcattctgtaaaataaactcTGTACTTAGTTTTTGTGGCTGTTTCTGTAAAAGCTTTTGCTTCTTTCATCCAAGAGAATCAATCGGTATAG

Function

symbol description
pkib Predicted to enable cAMP-dependent protein kinase inhibitor activity. Predicted to be involved in negative regulation of cAMP-dependent protein kinase activity. Predicted to act upstream of or within negative regulation of protein kinase activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human PKIB (cAMP-dependent protein kinase inhibitor beta).

NR:

description
cAMP-dependent protein kinase inhibitor alpha-like

GO:

id name namespace
GO:0006469 negative regulation of protein kinase activity biological_process
GO:0004862 cAMP-dependent protein kinase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350820 False 678 TUCP 0.47 3 15274431 15304114
XM_026923622.2 True 1438 mRNA 0.41 3 15273854 15304297

Neighbor

gene id symbol gene type direction distance location
LOC113531926 NA coding downstream 1 15272111 ~ 15273853 (-)
LOC117599773 NA coding downstream 14434 15258373 ~ 15259420 (-)
LOC113531927 NA coding downstream 23092 15248548 ~ 15250762 (-)
smpdl3a smpdl3a coding downstream 29442 15233937 ~ 15244412 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding downstream 47079 15196936 ~ 15226775 (-)
hsf2 hsf2 coding upstream 19543 15323840 ~ 15334768 (-)
cx43 LOC108257942,LOC107675226,LOC107602186,LOC107716890,LOC107598086 coding upstream 152712 15457009 ~ 15460449 (-)
LOC113531925 cx32,LOC108257940,LOC108424424 coding upstream 158697 15462994 ~ 15468358 (-)
LOC113531789 LOC108257940 coding upstream 170519 15474816 ~ 15482360 (-)
LOC113532227 LOC108257939,LOC103044766,LOC108424467 coding upstream 187048 15491345 ~ 15493317 (-)
G295909 NA non-coding downstream 481105 14792540 ~ 14792749 (-)
G295836 NA non-coding downstream 585218 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 603544 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 604129 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 677442 14594416 ~ 14596412 (-)
G296237 NA non-coding upstream 18694 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 848037 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 853037 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 859194 16163491 ~ 16165288 (-)
LOC117599726 NA non-coding upstream 1034785 16339082 ~ 16342070 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 501819 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 677459 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 679223 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 679861 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 681379 14592135 ~ 14592475 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 158784 15463081 ~ 15482361 (-)
pln NA other upstream 829837 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1250806 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 1738869 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 1929680 17233977 ~ 17236129 (-)

Expression


Co-expression Network