trnal-cag_13


Basic Information

Item Value
gene id trnal-cag_13
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14593911 ~ 14593993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnal-cag_13
GTCAGGATGGCCGAGCGGTCTAAGGCGCTGCGTTCAGGTCGCAGTCTCCCCTGGAGgcgtgggttcgaatcccacttCTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-cag_13 True 83 tRNA 0.63 1 14593911 14593993

Neighbor

gene id symbol gene type direction distance location
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding downstream 5655 14557104 ~ 14588256 (-)
lgals8a LOC108258055 coding downstream 238359 14345091 ~ 14355552 (-)
tmem242 tmem242,LOC107679673,LOC107555301 coding downstream 283646 14305201 ~ 14310265 (-)
trnaa-agc_14 NA coding downstream 467925 14125914 ~ 14125986 (-)
cebpz cebpz,LOC104960473 coding downstream 561805 14020127 ~ 14032106 (-)
clu clu coding upstream 27864 14621857 ~ 14632266 (-)
LOC113532135 NA coding upstream 88189 14682182 ~ 14686085 (-)
ccdc25 ccdc25,LOC107675065 coding upstream 96171 14690164 ~ 14696661 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 114067 14708060 ~ 14713903 (-)
LOC113532199 slc35d3 coding upstream 123846 14717839 ~ 14725117 (-)
G295753 NA non-coding downstream 75419 14518274 ~ 14518492 (-)
G295708 NA non-coding downstream 196526 14397147 ~ 14397385 (-)
trnas-gcu_18 NA non-coding downstream 196910 14396920 ~ 14397001 (-)
trnas-gcu_17 NA non-coding downstream 197723 14396107 ~ 14396188 (-)
LOC113532335 NA non-coding downstream 199147 14391568 ~ 14394764 (-)
G295783 NA non-coding upstream 423 14594416 ~ 14596412 (-)
G295827 NA non-coding upstream 75515 14669508 ~ 14669725 (-)
G295828 NA non-coding upstream 76108 14670101 ~ 14670310 (-)
G295836 NA non-coding upstream 94365 14688358 ~ 14688636 (-)
G295909 NA non-coding upstream 198547 14792540 ~ 14792749 (-)
trnal-cag_12 NA other downstream 1436 14592135 ~ 14592475 (-)
trnas-gcu_15 NA other downstream 207215 14386615 ~ 14386696 (-)
trnas-gcu_12 NA other downstream 210096 14383581 ~ 14383815 (-)
trnas-gcu_10 NA other downstream 211563 14382087 ~ 14382348 (-)
LOC113531878 prkd3,LOC101070414 other downstream 489266 14047198 ~ 14104645 (-)
trnal-cag_14 NA other upstream 556 14594549 ~ 14594631 (-)
trnal-cag_15 NA other upstream 2320 14596313 ~ 14596395 (-)
pex7 pex7,LOC107727680,LOC107676274 other upstream 132408 14726401 ~ 14772035 (-)
pkib pkib other upstream 679861 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 869088 15463081 ~ 15482361 (-)

Expression


Co-expression Network