cebpz (cebpz,LOC104960473)


Basic Information

Item Value
gene id cebpz
gene name cebpz,LOC104960473
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14020127 ~ 14032106 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923306.2
AGGGTTTTAACTAACACTGTTCGCGCTCTATGGAAGTGCACTTTATGCTCAATAGTGTGCCGTTTGGAACAGAGCCGCTGTGTGTTGATTGTCTTTTCCAGCATGGCTCCGAAAGGCAAGCGGCGGCCGGAGAAAGCTGAAAGATttgaacaaaatgaagaagacacGATTGAAAACGACAACGACGAAGCTGGGAATGATGAAGACGAGAAAGGGGAGGATGAATTTACCCTGGATGATGTGCTGCGTTTGGGAGGCACTAAGGCAGACTACATCATGCTCACTGCAGTTGATGACAGTGCTGAGCTGGTAAATGGTGGAAAGAAAGGTGCAATCGATGATTTAGAGGATGGTGAGCTAGAAGAGTTCATCACCAAACTGGGAATCCGGTCCTACTCTGACCAGCAGGTTGTTGAGGGTGATGACGAGGAtaagccagaagaagaagagaaatccTCCAAACCCAGTGTGGAAAAGaagagcaagaaaaaagaaGCCTCTAAAGTGGAGTCCAGCAAAACCCCCGAAGCCAAGCAAGAAGCCGAGGCGAAGAAGAGCGAGGCCAAAAGGACAAGCAAAAAGGCCAAGCAAAAAGAAGCCGACCTTTTTGAATTCTACCCCCGGCAGGTGCTGTTGGTCAAACCTGGAGGAAAATGGTACGATGTAGACTACACTTCTGAGATTAGCACTTCTCCTCAGGACGAATCGTTGGTTTCTCAGTACAAGGCTTTGGCTCAGAAGCTGCTAGAGGCTGAAACAAGTCTTTACAAAAGCAAGAAGAACCTACAGAAAGGAGCGAACACGGTCTGGATGAAGAGCGTCGTCTCGACTGGGACTCTGGCAGACCGGATGGCGGCCATGACTTTGCTCATCCAGGACGCTCCTGTGCACTGTCTGGAGCACATCGAGAGCCTGATCGTTATGATGAGGAAGAAGGGAAGTCGTAGGCAGGGCCTCATGGCTTTGGACACGCTTAAAGAGCTGCTGTTGTCTGATCTGCTCCCAGAGAATCGTAAGCTCAGGACGTTCTCCCAGCGCCCGTTCGACAAGCTGGAGGAGCGAGCAAGTGGAAACCGAGATGTCCGAGACCGGCGCCTTGTCCTCTGGTACTTCGAGCACCTTCTCAAGCTCCAGCTGGCTGAGTTTGTAACAGCTCTTGACGCTTTGGCTCACGATTCTGTCCTGGCCACCAAAACAAAAGCTCTTACTACAGCTCATGAGCTGCTCTGCAACCGGCCTGAGCAGGAAAAAGCCCTGCTGATGCACGTAGTCAACAAACTGGGAGATCCTGAGTACAAAATCGCCTCTAAGGCCTCATATCTGATGGAGACGCTACTCCATAAACACCCCTTGATGAAATCGGTGGTGTGCACTGAAGTAGAGCGTCTGATGTTCAGACCCAACATAAGCACCAAGGCTCAGTATTACGCCGCCTGCTTCCTCAACCAGGTGATGCTGAGCCACGACGAGGCCGAGCTCGCCACCAAACTCATCACTGTCTACTTCAGCTTCTTCCGTCTCTGCGTTAAGAAGAAGGACGTGGAGTCTAAGATGCTGGGCGCTCTGCTGAGCGGTGTGAACAGGGCCTATCCGTACACCAAGGCCGGAGATGAGACGGTCCGGGAGCAGCTGGACACGCTGTTTAAAGTGGTGCACCTTGTAAAGTTCAGCACAGCTGTGCAAGCTCTCATGCTGCTCTTCCAGGTTATGGATTCTCAGCAGAGTGTGTCAGATCGCTACTACGTCGCTCTGTACAAGAAGCTGTTGGATCCTGGCCTGTCAGTAAACTCGAAGCAGAGCATGTTCCTCAACCTGCTGTACAAATCCCTGAAAGCCGACATCGTCCTGCGCCGTGTTAAGGCCTTCGTAAAGAGGCTGCTGCAGGTGAGCTGTGAGCAGAGCCCGACGTTCGCCTGCGGAGCGCTCTTCCTCGTCTCCGAGGTCATGAAAGCCAAACCTGGCCTTAAGCTCCTCCTACAAGAAGGGgatgaggaggaggagaagttTCAGGACCTTAAAGgggaaaatgatgatgatgatgatgaagaagaaaggTTTGTGGATGCGGATAAAATTGAAGAGGGCCAGAGCGAAAAGCCTCAGCAGAACAAACCAGCTGCATCATGGGTACATCACCAAAACTTGGAGGGTGGTAAGGATATGGAGATGTATGACCCCACTCACAGAAACCCTTTATACTGTGGAGCGAATCACAGCACACTCTGGGAGCTGCAGAAGCTCGTTGATCATTTCCACCCCTCTGTGGCTCTCTTCGCAAAAACCATCTTGCAGGGAGGGCACATCCAGTACACAGGGGATCCTCTGCAGGACTTCACGCTCATCAGGTTCTTGGATCGGTTTGTGTTCAGAAACCCCAAACAAACGAAGGGCAAACAAAACACAGATGCGACTGTAATGCAGCCGAAGCACAAACAGAGCATGAATAACATCCGCTCATTGCCTGTAAACTGTGAGGAGTATCTGGCCAAAGAGGAAACTCAGATCCCTGTGGATGAGGTGTTCttctacagGTTCTTTAAaaagagggaaggagagaagCGATTAAAGAAGCCACTCGGAGATGACGCTGAGAGTGTGGAGGACGTGGATGACGACGAGTTTGAGCAGCTGCTCGaCACTATTGAGGGCGATAACTACTTCACAGAATTTAAAGATGACGACCTGGACTTTGCTGGCAATGTAAAGAGCAACAGCAAAAAAGGCAAGAAGGCCGAGGAGGTCTCTGATTCAGACGTGGATTCAGATGATGACCTGGATGATGAGGAGCTCTCTCTGGGAAGCATGGCTGAGGAAGACTTCGGAGACGAGCTGGAGGAAGACGGTGGTGCTTTTATGGACCCCGGTGGAGACgacaatgatgatgaagaagTACCAGAGCTTGAGGGCGATGATGATGAAGCCTTCGATGACTTTGATGAGGATATGGATGAGCCGCCAGAGGTCAGCACAGGAGGCAAAAAAGGCAAGAGGAAGTCCTCAGAGCATTTCGACTTTGCTGGATCTTTTGAATCCAAACCaagcaagaagaaaaagaaaggaaagatggATGACACAGGCATGTTTGCAGCAGCTGAGGAGTTTGGAGATTTGCTAGATGAAAATGCAGACATCAAGTTTGACAACATGGGCATGAACGCAATGGCTAACAAAGACAAAGCCAGTGTCAAACAGCTGAAATGGGAGAGGCAGCGTGATGACTGGATCCAGGGACGAGACGTTAAGACACTCAGGAGGAAGAAGGCCATgttcagaaagagaaaacagtttgggaaaggcgGACTGGGCAAAAAGACTGGAGGCAGGAAGAAGTGATGTCTCTCatcctcttgtgtgtgtgtgtgtgtgtgtgtctattccTGGGTCTATTCCTGCCCAGTAGACCACATGTCCCGATCAGCTTCCCGGATGCCGTAGTTCCCGGCCCATTCGTTGGACTTGTAATAAACTGAGAGAGAACGAAAGATGTTGAATTATGTTTCAGTTTGTAGTCATTAATTGCCATGTTAATGGCAAATATTGATGAAGTGAAGACAAAAAATTGTCTTaacatgtaaaaaaatgcattttgtaataaatgtaattttaccaTTTGTTTA

Function

symbol description
cebpz Predicted to be active in nucleus. Is expressed in optic cup and optic tectum. Orthologous to human CEBPZ (CCAAT enhancer binding protein zeta).

NR:

description
CCAAT/enhancer-binding protein zeta isoform X1

GO: NA

KEGG:

id description
K14832 MAK21, NOC1, CEBPZ; ribosome biogenesis protein MAK21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923306.2 True 3617 mRNA 0.49 17 14020127 14032106

Neighbor

gene id symbol gene type direction distance location
LOC113532178 LOC108257557 coding downstream 12745 14004144 ~ 14007382 (-)
nkx2.4b LOC108257947 coding downstream 122099 13895261 ~ 13898028 (-)
crnkl1 crnkl1,LOC102779463 coding downstream 284706 13728000 ~ 13735421 (-)
cd109 cd109 coding downstream 297276 13685262 ~ 13722851 (-)
hmbox1b hmbox1,LOC108257777 coding downstream 619650 13378998 ~ 13400477 (-)
trnaa-agc_14 NA coding upstream 93808 14125914 ~ 14125986 (-)
tmem242 tmem242,LOC107679673,LOC107555301 coding upstream 273095 14305201 ~ 14310265 (-)
lgals8a LOC108258055 coding upstream 312985 14345091 ~ 14355552 (-)
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding upstream 524998 14557104 ~ 14588256 (-)
clu clu coding upstream 589751 14621857 ~ 14632266 (-)
LOC113531851 NA non-coding downstream 106107 13908907 ~ 13914020 (-)
G295412 NA non-coding downstream 125280 13894330 ~ 13894847 (-)
G295287 NA non-coding downstream 239969 13779315 ~ 13780158 (-)
G295235 NA non-coding downstream 337896 13682030 ~ 13682231 (-)
G295197 NA non-coding downstream 435861 13582987 ~ 13584266 (-)
G295491 NA non-coding upstream 77375 14109481 ~ 14109964 (-)
G295631 NA non-coding upstream 208290 14240396 ~ 14240536 (-)
LOC113532335 NA non-coding upstream 359462 14391568 ~ 14394764 (-)
trnas-gcu_17 NA non-coding upstream 364001 14396107 ~ 14396188 (-)
trnas-gcu_18 NA non-coding upstream 364814 14396920 ~ 14397001 (-)
tmem151ba tmem151b other downstream 1451290 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 1702191 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 1773949 12242579 ~ 12246178 (-)
G294369 NA other downstream 1778226 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 1800703 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 15092 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 349981 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 351475 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 354509 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 560029 14592135 ~ 14592475 (-)

Expression


Co-expression Network