Gene
RNA
| Item | Value |
|---|---|
| gene id | trnas-gcu_12 |
| gene name | NA |
| gene type | misc |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 14383581 ~ 14383815 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU350209 | True | 227 | lncRNA | 0.44 | 1 | 14383581 | 14383807 |
| trnas-gcu_12 | False | 82 | tRNA | 0.59 | 1 | 14383734 | 14383815 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lgals8a | LOC108258055 | coding | downstream | 28029 | 14345091 ~ 14355552 (-) |
| tmem242 | tmem242,LOC107679673,LOC107555301 | coding | downstream | 73316 | 14305201 ~ 14310265 (-) |
| trnaa-agc_14 | NA | coding | downstream | 257595 | 14125914 ~ 14125986 (-) |
| cebpz | cebpz,LOC104960473 | coding | downstream | 351475 | 14020127 ~ 14032106 (-) |
| LOC113532178 | LOC108257557 | coding | downstream | 376199 | 14004144 ~ 14007382 (-) |
| bcl11bb | LOC108258024,LOC108426327,LOC103027528 | coding | upstream | 173289 | 14557104 ~ 14588256 (-) |
| clu | clu | coding | upstream | 238042 | 14621857 ~ 14632266 (-) |
| LOC113532135 | NA | coding | upstream | 298367 | 14682182 ~ 14686085 (-) |
| ccdc25 | ccdc25,LOC107675065 | coding | upstream | 306349 | 14690164 ~ 14696661 (-) |
| pbk | pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 | coding | upstream | 324245 | 14708060 ~ 14713903 (-) |
| G295631 | NA | non-coding | downstream | 143045 | 14240396 ~ 14240536 (-) |
| G295491 | NA | non-coding | downstream | 273617 | 14109481 ~ 14109964 (-) |
| LOC113531851 | NA | non-coding | downstream | 469561 | 13908907 ~ 13914020 (-) |
| G295412 | NA | non-coding | downstream | 488734 | 13894330 ~ 13894847 (-) |
| G295287 | NA | non-coding | downstream | 603423 | 13779315 ~ 13780158 (-) |
| LOC113532335 | NA | non-coding | upstream | 7753 | 14391568 ~ 14394764 (-) |
| trnas-gcu_17 | NA | non-coding | upstream | 12292 | 14396107 ~ 14396188 (-) |
| trnas-gcu_18 | NA | non-coding | upstream | 13105 | 14396920 ~ 14397001 (-) |
| G295708 | NA | non-coding | upstream | 13332 | 14397147 ~ 14397385 (-) |
| G295753 | NA | non-coding | upstream | 134459 | 14518274 ~ 14518492 (-) |
| trnas-gcu_10 | NA | other | downstream | 1233 | 14382087 ~ 14382348 (-) |
| LOC113531878 | prkd3,LOC101070414 | other | downstream | 278936 | 14047198 ~ 14104645 (-) |
| tmem151ba | tmem151b | other | downstream | 1814744 | 12559990 ~ 12568837 (-) |
| rd3 | rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 | other | downstream | 2065645 | 12311682 ~ 12317936 (-) |
| LOC113531840 | ccr6 | other | downstream | 2137403 | 12242579 ~ 12246178 (-) |
| trnas-gcu_15 | NA | other | upstream | 2800 | 14386615 ~ 14386696 (-) |
| trnal-cag_12 | NA | other | upstream | 208320 | 14592135 ~ 14592475 (-) |
| trnal-cag_13 | NA | other | upstream | 210096 | 14593911 ~ 14593993 (-) |
| trnal-cag_14 | NA | other | upstream | 210734 | 14594549 ~ 14594631 (-) |
| trnal-cag_15 | NA | other | upstream | 212498 | 14596313 ~ 14596395 (-) |
