lgals8a (LOC108258055)


Basic Information

Item Value
gene id lgals8a
gene name LOC108258055
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14345091 ~ 14355552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923543.2
CTACCTCAAGGAGATGTTGTATTGCGCGGAAGCCTTTATTTCGTAGCCTAAGTAGTGCACTTTAATAGGGAGTCAGGCAGGGATTTGGGAGTGACTCCGAGGTTAAGTATTTCTTGTACTGACCAGGGAGAGAAGCTGTGTCGTCGAAATGTCGGTAAAACAGCCGAAGCAGACTATACTCAACCcgCCCATCCCCATAGCAGTAACCATCCTGGGGGGCCTGCATCCAGATGAGATGGTTCTCATCCAAGGCTCTGTTCCAGCTGATGCAGACAGGTTTCAGGTGGACTTCATGTGCGGCAACAGTATTAAGCCCAGAGCAGACATTGCGTTCCACTTTAACCCACGCTTTAAGAAGAACCACATTGTGTGCAACACCCTGCAACTCGAGTACTGGGGTAAAGAAGAGATCCACTATCTGATGCCTTTCATGAAGGGGGCAGATTTCGAGATTATCGTGCTGGTAGAGAAAGATTTGTACAAGGTGGCAGTGAATGGTGCTCATGTGCTGGAGTACAAGCACAGAATAGATCTGGCCAGGGTGGACACACTATCTGTATCCGGGAAGGTTCAGATCCAGGCCATCGGATTCATTCCAAGCACAaatccTTCCAGTTCTCCATTAGCTGTGAAGGGCATCAGCACACAGGCACCAGCTATGCTGGATGACTCGTGTGATATGagtctTCCTTTTAGGAGGAAGCTAATAAAGGGCTTGAGTCCAGGACACACCATCACAGTCAAGGGTCAGATCATTGCCTATGCTCACAGCTTCGCTGTAAACCTGCGCGTCGGGAACTCGGAGGACATCGCGCTGCACTTAAACCCGCGGCTCAAATCTGGTTTGTTTGTTCGTAACTCTTACCTGTCACAGTGCTGGGGTCCAGAGGAGAACACCCTGCCCAACTTTCCCTTCGCTTCAGGAGAATACTTTGAGATGATAATCCTGTGTGAGGCACAGCAGTTTAAGGTGGCCGTGAATGGTGTTCATCAGCTGACCTACAAGCACCGCGTGCAGGACCTGAGTGGTGTGGACGAACTGGAGATCACCGGGGACCTGCAGCTGCTGGATGTTAAGATATGGTAACCGATACTCCATCCGCAGCTTTGAATAAAGACGTCTAGACTCGGCTCAACCCAAATCTGCTGATATAGTGTGTGCACAAAACCAACTAGTCTGTCTTTTACTCTTCTCATGTGCTACTACTAATATAAAGCACGAGGTCACAGCTTTGGCTGTAAAATTGATACCACTGCTGTTTAATATGTAACCACTTTAGCATCTACTAAGCTTTAACAAATAACAGTCATGACATAGGGATGAGTTACTATTTTTTGGGATTGTGTATTGAATTTCGGTAATGTGGGACCAAAAGGAACTGTAAAGAACATCGCTGTAAGGAACAATTTAACCAAATGTACATAATTTTTCCCTTTACGTCAAAAAAGTACTTagtcagccaagacatgtcTGAAGTTGGCTTTTTGGTATTGAACTGGAGATACAAGATCAATGTATCATGGAAACTGCCTGCTTAGTTGTTTGGTATCTTTTAAAAATTTGCCTATGTGGTTTCTGATACACTGTTATTGATAGAAATGGACAAAAGGGCATcacagcagccattttgaattccTCAGCATGTAGTTTGTTGTCATTAATCAGACTAATCAGTGCTGTGGCTTAATGTTAGAAGGCAGACTTGTACGTTTCAGATGATTATACATTTCcaatttgatttgtatatttaaataatgtaattaattaattagtgcAGTATGTATGTAGTACACAATATGATGTGAGCGTGTGAATATTTAGACATGCactaaactggtggctataagcttccCTTATTTATCAACCTCATAGCTCTAGGGAGGattatgtacattttgtttgttctttgaaGATGTGGGTGCAGGGATAGATAGGTAGCTGAATTTGGGGTTTAATCAGCTCCTCTCATTAAGAAAAGATATTTTGATATAATTTTGCTAGAAGAGAAAGATGTGCGATACACAAGGTGATCACATGACCTTGATATATCAATTGATGTATGAAATACAGGTATGATATGTTGTTTAAAACATTGCCTGAGGACATGATATGGAATATGGAATATCATGCTGGAAAATCTAGACCAGAGTAAAAAAAACCTATTACATGCAATCTAATAAAGCTAAACAGATCAAAGAAGCATTAAAGAATCACCCCGAGGCTGCCTCGGGCTCCGACGGCCAGGCGTGTAGTTTACACACATTATGGGTATGTTCCGGTATTACTCCAAATGGATCATTTTGCAGGTAGGTTTTGTATTTCAGTCATTTCAATCAAGAATCTTCAGGCAGGATGGGATGTAATGCTATCCTACTTATTGCAGTAATGACGAAACAGGTTTActagttaggagttaggagtaaGTGAAGAAAATGttcaagagaaaggaaaatgtCACATATTTGAGGCTAAATCCTTAACAAATTAATTAGCAGATGTCTAGTTTAATATCCACCCAGATGGTCAGACAGATGTGCTTTAAGTGTGTCAGGAAGCCCTTGATATCCAAGGGCAAATTTCAGTTCTATGCAAGTCATCAGCAGACTGTAGCCTACGCAGATTTCCATTAAAACAACTCATTAAATCTCAAATCAGAAAGTGCTGAAACGTGCTGGATTTAGCACTAGTTTACTAACGGCACAATTTTAGACAAAGTGTCCTTGAAGTaccagagaaaagaaagaattcCTAATGATTTAGCCTTTAAATTTTGAAACATTGTACTGTGATATGTTTTCTCTCTAATTTCAggttaataatcaataatgcaTGTTAAGAGACTTAATGATATAGTTGATGAACTGTTAccttttttctatttataattTGTATTGTGCTGACCAATATATCTATACAAGTTACACACGTAtagtatttctgtctttctttctaaaaacagtaataaaaatttatgaataaagtAAATGTCAGGAAACGA

Function

NR:

description
galectin-8-like

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06832 LGALS8; galectin-8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923543.2 True 2999 mRNA 0.41 9 14345091 14355552

Neighbor

gene id symbol gene type direction distance location
tmem242 tmem242,LOC107679673,LOC107555301 coding downstream 34826 14305201 ~ 14310265 (-)
trnaa-agc_14 NA coding downstream 219105 14125914 ~ 14125986 (-)
cebpz cebpz,LOC104960473 coding downstream 312985 14020127 ~ 14032106 (-)
LOC113532178 LOC108257557 coding downstream 337709 14004144 ~ 14007382 (-)
nkx2.4b LOC108257947 coding downstream 447063 13895261 ~ 13898028 (-)
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding upstream 201552 14557104 ~ 14588256 (-)
clu clu coding upstream 266305 14621857 ~ 14632266 (-)
LOC113532135 NA coding upstream 326630 14682182 ~ 14686085 (-)
ccdc25 ccdc25,LOC107675065 coding upstream 334612 14690164 ~ 14696661 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 352508 14708060 ~ 14713903 (-)
G295631 NA non-coding downstream 104555 14240396 ~ 14240536 (-)
G295491 NA non-coding downstream 235127 14109481 ~ 14109964 (-)
LOC113531851 NA non-coding downstream 431071 13908907 ~ 13914020 (-)
G295412 NA non-coding downstream 450244 13894330 ~ 13894847 (-)
G295287 NA non-coding downstream 564933 13779315 ~ 13780158 (-)
LOC113532335 NA non-coding upstream 36016 14391568 ~ 14394764 (-)
trnas-gcu_17 NA non-coding upstream 40555 14396107 ~ 14396188 (-)
trnas-gcu_18 NA non-coding upstream 41368 14396920 ~ 14397001 (-)
G295708 NA non-coding upstream 41595 14397147 ~ 14397385 (-)
G295753 NA non-coding upstream 162722 14518274 ~ 14518492 (-)
LOC113531878 prkd3,LOC101070414 other downstream 240446 14047198 ~ 14104645 (-)
tmem151ba tmem151b other downstream 1776254 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 2027155 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 2098913 12242579 ~ 12246178 (-)
G294369 NA other downstream 2103190 12240989 ~ 12241901 (-)
trnas-gcu_10 NA other upstream 26535 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 28029 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 31063 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 236583 14592135 ~ 14592475 (-)
trnal-cag_13 NA other upstream 238359 14593911 ~ 14593993 (-)

Expression


Co-expression Network