RNA id: XM_026923543.2


Basic Information

Item Value
RNA id XM_026923543.2
length 2999
RNA type mRNA
GC content 0.41
exon number 9
gene id lgals8a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14345091 ~ 14355552 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACCTCAAGGAGATGTTGTATTGCGCGGAAGCCTTTATTTCGTAGCCTAAGTAGTGCACTTTAATAGGGAGTCAGGCAGGGATTTGGGAGTGACTCCGAGGTTAAGTATTTCTTGTACTGACCAGGGAGAGAAGCTGTGTCGTCGAAATGTCGGTAAAACAGCCGAAGCAGACTATACTCAACCcgCCCATCCCCATAGCAGTAACCATCCTGGGGGGCCTGCATCCAGATGAGATGGTTCTCATCCAAGGCTCTGTTCCAGCTGATGCAGACAGGTTTCAGGTGGACTTCATGTGCGGCAACAGTATTAAGCCCAGAGCAGACATTGCGTTCCACTTTAACCCACGCTTTAAGAAGAACCACATTGTGTGCAACACCCTGCAACTCGAGTACTGGGGTAAAGAAGAGATCCACTATCTGATGCCTTTCATGAAGGGGGCAGATTTCGAGATTATCGTGCTGGTAGAGAAAGATTTGTACAAGGTGGCAGTGAATGGTGCTCATGTGCTGGAGTACAAGCACAGAATAGATCTGGCCAGGGTGGACACACTATCTGTATCCGGGAAGGTTCAGATCCAGGCCATCGGATTCATTCCAAGCACAaatccTTCCAGTTCTCCATTAGCTGTGAAGGGCATCAGCACACAGGCACCAGCTATGCTGGATGACTCGTGTGATATGagtctTCCTTTTAGGAGGAAGCTAATAAAGGGCTTGAGTCCAGGACACACCATCACAGTCAAGGGTCAGATCATTGCCTATGCTCACAGCTTCGCTGTAAACCTGCGCGTCGGGAACTCGGAGGACATCGCGCTGCACTTAAACCCGCGGCTCAAATCTGGTTTGTTTGTTCGTAACTCTTACCTGTCACAGTGCTGGGGTCCAGAGGAGAACACCCTGCCCAACTTTCCCTTCGCTTCAGGAGAATACTTTGAGATGATAATCCTGTGTGAGGCACAGCAGTTTAAGGTGGCCGTGAATGGTGTTCATCAGCTGACCTACAAGCACCGCGTGCAGGACCTGAGTGGTGTGGACGAACTGGAGATCACCGGGGACCTGCAGCTGCTGGATGTTAAGATATGGTAACCGATACTCCATCCGCAGCTTTGAATAAAGACGTCTAGACTCGGCTCAACCCAAATCTGCTGATATAGTGTGTGCACAAAACCAACTAGTCTGTCTTTTACTCTTCTCATGTGCTACTACTAATATAAAGCACGAGGTCACAGCTTTGGCTGTAAAATTGATACCACTGCTGTTTAATATGTAACCACTTTAGCATCTACTAAGCTTTAACAAATAACAGTCATGACATAGGGATGAGTTACTATTTTTTGGGATTGTGTATTGAATTTCGGTAATGTGGGACCAAAAGGAACTGTAAAGAACATCGCTGTAAGGAACAATTTAACCAAATGTACATAATTTTTCCCTTTACGTCAAAAAAGTACTTagtcagccaagacatgtcTGAAGTTGGCTTTTTGGTATTGAACTGGAGATACAAGATCAATGTATCATGGAAACTGCCTGCTTAGTTGTTTGGTATCTTTTAAAAATTTGCCTATGTGGTTTCTGATACACTGTTATTGATAGAAATGGACAAAAGGGCATcacagcagccattttgaattccTCAGCATGTAGTTTGTTGTCATTAATCAGACTAATCAGTGCTGTGGCTTAATGTTAGAAGGCAGACTTGTACGTTTCAGATGATTATACATTTCcaatttgatttgtatatttaaataatgtaattaattaattagtgcAGTATGTATGTAGTACACAATATGATGTGAGCGTGTGAATATTTAGACATGCactaaactggtggctataagcttccCTTATTTATCAACCTCATAGCTCTAGGGAGGattatgtacattttgtttgttctttgaaGATGTGGGTGCAGGGATAGATAGGTAGCTGAATTTGGGGTTTAATCAGCTCCTCTCATTAAGAAAAGATATTTTGATATAATTTTGCTAGAAGAGAAAGATGTGCGATACACAAGGTGATCACATGACCTTGATATATCAATTGATGTATGAAATACAGGTATGATATGTTGTTTAAAACATTGCCTGAGGACATGATATGGAATATGGAATATCATGCTGGAAAATCTAGACCAGAGTAAAAAAAACCTATTACATGCAATCTAATAAAGCTAAACAGATCAAAGAAGCATTAAAGAATCACCCCGAGGCTGCCTCGGGCTCCGACGGCCAGGCGTGTAGTTTACACACATTATGGGTATGTTCCGGTATTACTCCAAATGGATCATTTTGCAGGTAGGTTTTGTATTTCAGTCATTTCAATCAAGAATCTTCAGGCAGGATGGGATGTAATGCTATCCTACTTATTGCAGTAATGACGAAACAGGTTTActagttaggagttaggagtaaGTGAAGAAAATGttcaagagaaaggaaaatgtCACATATTTGAGGCTAAATCCTTAACAAATTAATTAGCAGATGTCTAGTTTAATATCCACCCAGATGGTCAGACAGATGTGCTTTAAGTGTGTCAGGAAGCCCTTGATATCCAAGGGCAAATTTCAGTTCTATGCAAGTCATCAGCAGACTGTAGCCTACGCAGATTTCCATTAAAACAACTCATTAAATCTCAAATCAGAAAGTGCTGAAACGTGCTGGATTTAGCACTAGTTTACTAACGGCACAATTTTAGACAAAGTGTCCTTGAAGTaccagagaaaagaaagaattcCTAATGATTTAGCCTTTAAATTTTGAAACATTGTACTGTGATATGTTTTCTCTCTAATTTCAggttaataatcaataatgcaTGTTAAGAGACTTAATGATATAGTTGATGAACTGTTAccttttttctatttataattTGTATTGTGCTGACCAATATATCTATACAAGTTACACACGTAtagtatttctgtctttctttctaaaaacagtaataaaaatttatgaataaagtAAATGTCAGGAAACGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06832 LGALS8; galectin-8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350139 lncRNA downstream 104555 14240396 ~ 14240536 (-) True G295631
TU349980 lncRNA downstream 235127 14109481 ~ 14109964 (-) True G295491
TU349935 lncRNA downstream 240515 14103474 ~ 14104576 (-) False LOC113531878
TU349934 lncRNA downstream 240559 14103474 ~ 14104532 (-) False LOC113531878
TU349917 lncRNA downstream 293998 14048302 ~ 14051093 (-) False LOC113531878
TU350206 lncRNA upstream 26535 14382087 ~ 14382340 (-) True trnas-gcu_10
TU350209 lncRNA upstream 28029 14383581 ~ 14383807 (-) True trnas-gcu_12
TU350218 lncRNA upstream 36016 14391568 ~ 14394759 (-) False LOC113532335
XR_003403334.2 lncRNA upstream 36411 14391963 ~ 14394764 (-) True LOC113532335
TU350223 lncRNA upstream 41595 14397147 ~ 14397385 (-) True G295708
XM_026923485.2 mRNA downstream 34826 14305201 ~ 14310265 (-) True tmem242
XM_034313911.1 mRNA downstream 240446 14047198 ~ 14104645 (-) True LOC113531878
XM_026923306.2 mRNA downstream 312985 14020127 ~ 14032106 (-) True cebpz
XM_026923399.2 mRNA downstream 337709 14004144 ~ 14007382 (-) True LOC113532178
XM_026923400.2 mRNA downstream 338213 14004144 ~ 14006878 (-) False LOC113532178
XM_026923292.2 mRNA upstream 201552 14557104 ~ 14588256 (-) True bcl11bb
XM_026923497.2 mRNA upstream 266305 14621857 ~ 14632266 (-) False clu
XM_026923495.2 mRNA upstream 266305 14621857 ~ 14632266 (-) True clu
XM_026923496.2 mRNA upstream 266305 14621857 ~ 14632234 (-) False clu
XM_026923320.2 mRNA upstream 326630 14682182 ~ 14686085 (-) True LOC113532135
trnaa-agc_14 other downstream 219105 14125914 ~ 14125986 (-) True trnaa-agc_14
trnar-ucu_10 other downstream 1212817 13132183 ~ 13132274 (-) True trnar-ucu_10
XR_003403316.2 other downstream 1776254 12559990 ~ 12568837 (-) False tmem151ba
TU348848 other downstream 2027175 12314852 ~ 12317916 (-) False rd3
TU348723 other downstream 2103190 12240989 ~ 12241901 (-) True G294369
trnas-gcu_10 other upstream 26715 14382267 ~ 14382348 (-) False trnas-gcu_10
trnas-gcu_12 other upstream 28182 14383734 ~ 14383815 (-) False trnas-gcu_12
trnas-gcu_15 other upstream 31063 14386615 ~ 14386696 (-) True trnas-gcu_15
trnas-gcu_17 other upstream 40555 14396107 ~ 14396188 (-) True trnas-gcu_17
trnas-gcu_18 other upstream 41368 14396920 ~ 14397001 (-) True trnas-gcu_18

Expression Profile