G294369


Basic Information

Item Value
gene id G294369
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12240989 ~ 12241901 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU348723
TTCCCATGTTGTCTTTGGAGAATGTCTTTTCCCATGttgtcttttgttgttttgtttacagtCAAGCTTACAAACAATTGTGTAGTGTTTGATTAGTGACCGATTCCTCTTTCTTCTACTCTCAAGCTAAAAGGACAATTCataccagctccataacaactCCATGTAAGACTTCCAGTGTCACTTTTACCCagtctccaagaccatcaccatcaccacacgctccaaccagaagccgtggatgactgcagaggtgcgtgcgctactgaggaccTGAGACTCTGCCATCAGAGCAGGTGGtgaggtggccctaagaacagcgagggccaaactgtcccgggccatcagagaggcaaagcgcgcacacgctcagagaatccacagccacttcaaggccagcagagacacgtggcgcatgtggcagggcatccaggccatcaccaactacaggacaacatcacctgcctgtgacagtgatgcctccctcccagatgcgctgaacaacttctacgctccgtttgaggcacagaatggcgtgacggcaaggaagaccacccctcctcccaatgaccaggtgctgtgtctaaccacggccgatgtgaggaagactctacacagagtcaacccgcagaaggctgctggaccagacaacattcctggcaggatgctcagaggatgtgcagaccagcagGCAGATATTTTcatggacatcttcaacacctctccttgagcagcaccgttgttccaacgtgcttcaaggccaccaccatcgtccctgtgccaaagaagtctccagtgtcctgcctcaacgaCTACTTTCCtgttgcactcacacccatcattatgaagtgcttcgagaggctcgtcatgaggcacatcaagaccctgctgcccccctcactggacgctcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU348723 True 913 TUCP 0.53 1 12240989 12241901

Neighbor

gene id symbol gene type direction distance location
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 182514 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 525650 11711429 ~ 11715339 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding downstream 543667 11692588 ~ 11697322 (-)
hsp90aa1.2 LOC108257811,LOC108411456,LOC101068853 coding downstream 548675 11686439 ~ 11692314 (-)
ppp2r5cb ppp2r5cb,LOC108257814,LOC108411434,LOC103025090,LOC107704375,LOC103369946 coding downstream 556809 11658684 ~ 11684180 (-)
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding upstream 93391 12335292 ~ 12345693 (-)
nek2 nek2,LOC107712406 coding upstream 110977 12352878 ~ 12361063 (-)
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding upstream 123378 12365279 ~ 12412879 (-)
ints7 ints7,LOC107659878,LOC107685756 coding upstream 172405 12414306 ~ 12433569 (-)
LOC113531824 NA coding upstream 298628 12540529 ~ 12549262 (-)
G294320 NA non-coding downstream 105545 12135243 ~ 12135444 (-)
G294303 NA non-coding downstream 132829 12107942 ~ 12108160 (-)
G294300 NA non-coding downstream 138343 12102422 ~ 12102646 (-)
LOC117599805 NA non-coding downstream 194646 12039551 ~ 12046343 (-)
G293904 NA non-coding downstream 515664 11675246 ~ 11725325 (-)
G294461 NA non-coding upstream 88512 12330413 ~ 12335201 (-)
G294482 NA non-coding upstream 143796 12385697 ~ 12386315 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding upstream 356472 12598373 ~ 12603091 (-)
G294854 NA non-coding upstream 600622 12842523 ~ 12860847 (-)
G294966 NA non-coding upstream 875964 13117865 ~ 13118370 (-)
LOC113532050 LOC108257549 other downstream 21565 12095418 ~ 12219424 (-)
saysd1 saysd1 other downstream 165481 12068969 ~ 12075508 (-)
id2b LOC108257525 other downstream 1494230 10743639 ~ 10746759 (-)
G293480 NA other downstream 1559299 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 1702883 10531994 ~ 10538106 (-)
LOC113531840 ccr6 other upstream 678 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 69781 12311682 ~ 12317936 (-)
tmem151ba tmem151b other upstream 318089 12559990 ~ 12568837 (-)
LOC113531878 prkd3,LOC101070414 other upstream 1805297 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 2140186 14382087 ~ 14382348 (-)

Expression


Co-expression Network