nek2 (nek2,LOC107712406)


Basic Information

Item Value
gene id nek2
gene name nek2,LOC107712406
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12352878 ~ 12361063 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922755.2
ACTACTCAGGGGACAAGAGCTGTACTGTTACACACTATGTAGTGTACTTATATAGGGCGTAAGAAGGCGTTTGAGATTCAGCCTAGTCAACTTTGTCGCTGTCAGTATAAAAGGTGGAACATTTGCACACCTTGTTGAGTGAGTTAGGACGTGTGTTTTCATAGTGAAAAGTTTAATGTTGCTATAAGACCGGAACGCTATAATATTAAAGTTAAGCTTTATACTTTGAATGAGTGCAGCTGAGCAGCTAGTGTAGTGTTTGCCCTTCATTAAATTAACGCTACGTTGCTCCTCCAAACATTTCAGGGTTGTTGTATGTTTCAGCGCTTTTGTCGCCACAATGCCGTCCCGCACGGAGGACTACGAAGTTCTCAGCACCATAGGCTCCGGCTCGTACGGAAAATGCCAGAAAATTAGGAGAAAATCCGACGGAAAGaTCCTGGTGTGGAAGGAGCTGGATTATGGCACCATGGCAGAGGTGGAGAAGCAGATGTTGGTGTCGGAAGTGAACCTGCTGCGGGAGCTGAGACACCCTAACATCGTCAGATACTACGACCGCATCATCGACCGCACCAACACCACTCTGTATATCGTGATGGAGTTCTGCGAGGGCGGTGACCTGGCCACTCTCATAAGCAAGTGCATTAAAGAGAGGAGGTATCTGGAGGAGGAGTTTATCCTACGCGTCATGGCTCAGCTGTCTCTGGCCCTGAAGGAGTGTCATGGCCGGAATGATGGAGGCAGCACGGTCCTTCATCGTGATCTGAAACCTGCTAACATCTTCCTCGATGCCAAGCAAAATGTAAAACTCGGCGATTTTGGCCTGGCAAGGATTCTTAAACATGACACAAGCTTTGCTAAAACCTTTGTGGGGACTCCGTATTACATGTCACCTGAACAAATGAATCGCATGTCCTACAACGAAAAGTCAGACATCTGGTCATTAGGATGTTTGCTGTATGAACTCTGTGCCTTGTCTCCCCCCTTCACAGCCTATAACCAGGAGGAACTGGCTGAGAAGATCAACGAGGGGAAGTTCAGGAGGATTCCATACCGATACTCGGATGAGCTGAACACGCTGCTGTGCAGGATGCTGCATCTAAAGGATTACCTGCGTCCCTCGGTGGACTCGATCCTCCAGAGCTTGTTAATCTCCACGTATGTGGCTCAGGAGCAGAAGAAGGCTCAGGCGAGGCAGCAGCGGGGGTCATGTGACCTGGAGCAGCCTAAACTGGTGGAACTGAAGCTGAAGGAGCAGGCACTACGCCAGCGCGAGCAGGACCTTAAGGAGCGAGAAGAGAGACTGGAGCAGAAGGAGCAGGAGCTGTGCATTAGAGAGAGACTAGCGAACGAGAAGCTGACCAGAGCAGAGAGTTTGATGAAGGCCTATAATGTGATGAGGCAGCAGAGGGCACACTCTCCACTGTTTACAGAAGACAGAGATGAGAGCAAGAACATGTCACCTGGAAAGAAGAAAGTCCATTTTGCAGGTGACAGCAAAGAGAACATGTGTCCTGAGCAGAAACTCGGCATCAGAACTCAGGAGCGTGTGCTCATTAAGAAACTGCAGGCCGTTAATATAGGAGAAATGGAGAGGAATTATCAGCTGAAGTGCAGGCCCATGCAGGGTATTCGCTAACACTGACGGATTACAAGCAAATCCTGATTTCAGCACAATGTATCATCcctgaaaaatgacaaactctCCACAAAGCATCAGAAGCATCTACTAAAGACTTCATTGTGAAAGGCTTCAGAAAGATTGTGGGCTTTCCTTATAAGACACGAAATCAATCTTAGCTGGACAACTTGGCCTTGTTTTAAGTTCATGCCTTTTCATACAGCTTAATATCAAGGATTTCAAGAagtgttatatttattgtgttttagaAAGTGAAGTTTGGCCAAAGGTCTAACACTGGataattgtatttaatgttaGTTATGTGTTTCTGAGAATGTGAGTGTAAATTGTGTTGGTGCTTAActttattttagtcattttatttttagtagtgttgtatgttgtaaatgtttgtacatttattgtgtagatcaaaagaaaagaaaaaaactttcttGTCTGGTTA

Function

symbol description
nek2 Predicted to enable protein serine/threonine kinase activity. Acts upstream of or within retinal rod cell development. Predicted to be active in centrosome; cytoplasm; and nucleus. Human ortholog(s) of this gene implicated in retinitis pigmentosa 67. Orthologous to human NEK2 (NIMA related kinase 2).

NR:

description
serine/threonine-protein kinase Nek2-like

GO:

id name namespace
GO:0046548 retinal rod cell development biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K20872 NEK2; NIMA (never in mitosis gene a)-related kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922755.2 True 2090 mRNA 0.46 9 12352878 12361063

Neighbor

gene id symbol gene type direction distance location
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding downstream 7185 12335292 ~ 12345693 (-)
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 294403 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 637539 11711429 ~ 11715339 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding downstream 655556 11692588 ~ 11697322 (-)
hsp90aa1.2 LOC108257811,LOC108411456,LOC101068853 coding downstream 660564 11686439 ~ 11692314 (-)
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding upstream 4216 12365279 ~ 12412879 (-)
ints7 ints7,LOC107659878,LOC107685756 coding upstream 53243 12414306 ~ 12433569 (-)
LOC113531824 NA coding upstream 179466 12540529 ~ 12549262 (-)
hsp90ab1 hsp90ab1 coding upstream 251902 12612965 ~ 12619954 (-)
eif2s1b eif2s1,eif2s1b,LOC108426300 coding upstream 279084 12640147 ~ 12647693 (-)
G294461 NA non-coding downstream 17677 12330413 ~ 12335201 (-)
G294320 NA non-coding downstream 217434 12135243 ~ 12135444 (-)
G294303 NA non-coding downstream 244718 12107942 ~ 12108160 (-)
G294300 NA non-coding downstream 250232 12102422 ~ 12102646 (-)
LOC117599805 NA non-coding downstream 306535 12039551 ~ 12046343 (-)
G294482 NA non-coding upstream 24634 12385697 ~ 12386315 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding upstream 237310 12598373 ~ 12603091 (-)
G294854 NA non-coding upstream 481460 12842523 ~ 12860847 (-)
G294966 NA non-coding upstream 756802 13117865 ~ 13118370 (-)
G295013 NA non-coding upstream 822449 13183512 ~ 13183817 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 34942 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 106700 12242579 ~ 12246178 (-)
G294369 NA other downstream 110977 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 133454 12095418 ~ 12219424 (-)
saysd1 saysd1 other downstream 277370 12068969 ~ 12075508 (-)
tmem151ba tmem151b other upstream 198927 12559990 ~ 12568837 (-)
LOC113531878 prkd3,LOC101070414 other upstream 1686135 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 2021024 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 2022518 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 2025552 14386615 ~ 14386696 (-)

Expression


Co-expression Network