slc30a1a (slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259)


Basic Information

Item Value
gene id slc30a1a
gene name slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12335292 ~ 12345693 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923235.2
ACGAGAATCTGCCTTGTTCCGTGTGGAAACTTTGCCGGTCCGGGTGCAAAGTTTGAACTCCGTCTGCAAAACGCCGCTCGGTGCTTTTCTTCGTTTGTCACGATTCGCTTGAACGAGGCGCGAGACGTCGCGAGTGAGGTTTATCACCCGAGTTCTGTTGGGTTTTGCGGGAATAGATCAGAAGTGAAGGCGGAATCTCGTGTGACTGGGGTGAATTCGCTAGCCAGTGCCGGTTagcattgttttgtttgtatgttgtgttagctgtgcgtgtgtgtgtgtgcgtgtgtgtggtagCTGAGACGCTCTCGGAGGAAACCATGGCTTGTGAACCGAACCGCGCCCGGTTGCTGTGCATGCTGTCGTTAACGTTCGGGTTCTTCGTGGTCGAGGTGGTGGTGAGCCGGCTCACGGCGTCGCTCGCGATGCTCTCGGACTCCTTCCACATGCTGTCGGATGTGATGGCGCTGATCGTGGCGCTGGTGGCGGTGCGTTTCGCCGAGCGCACCCAGTCCACCAACAAGAACACGTTCGGCTGGATCCGCGCCGAGGTGATGGGCGCCCTGGTCAACGCCGTGTTCCTCACCGCGCTCTGCTTCACCATCGTGCTCGAGGCCATCGAGCGCTTCACCGAGCCGCACGAGATCGAGAGCCCGCTCGTGGTGATCGCCGTCGGGGCCGCGGGGCTCGTGGTGAACCTGCTAGGGCTGTGTCTCTTCCACGGCCACGCTCACTCGCACAGCCACGGCAAGGGGAAGCACTCCAGGGCGAACACCAGCAAGAGCGAGACCTCCACTGACTGCGGGTCCGCCGCGGAGGAGACCAACAACCTGGTCGGAGGTCCCGGGAGCAGCAGCCCGAACGGCGTGAACACCGAGAGCAGGGGAGCCTCCGCAGAGTTATCAGCTGTGCAGCTGAACGGTGAGCTGGATCACGAGCACGACCTTGAGCATGATCATGATTCATCCTCGTCATCCCAGCTGAACATGCGTGGTGTTTTCCTTCATGTTCTGGGTGACGCGCTTGGCTCCGTCATCGTCGTGGTCAACGCCATCATCTTCACCTTTGTGTGGCGTCCGTGTGACCCCGGTGTTCCCTGCAACAACCCATGCAGTgccaacacacactgcagtgacCACCAACACCTTAACCACACGCTTGTGGGCTTTGGCGAGGCAGAAGACAGCAACGCGAGCGCCTCCGCATTCTCCACAGCTGGGCCCTGCTGGGTGCTGTACCTGGACCCGACTCTGTGCCTCATCATGGTCTGCATTCTTCTGTACACGACGTACCCGCTCTTGAAGGAGTCAGCGCTCATCCTGCTGCAGACTGTACCCAAGCAGATCGACGTGAGCCTCCTGAGCACTCGCCTGCGCCAGCTTGATGGCGTTCTGGCTGTGCACGAGCTCCATATCTGGCAGCTCGCCGGGAGTCGCATCATCGCCACGGCACACATCAAATGCCGAGACCCTGCCTCCTACATGAGTGTGGCCAAGCGCCTCAAGGCCTTCTTCCATGACGAGGGCATCCATGCCACCACCATCCAGCCTGAGTTCGTCATGGTGAGCTCTGAGTCACACGCCTCGCTCTGTGAGCTCTCCTGCCGCACGCAGTGCGCCGCTAAACTCTGCTGTCAAAATGCCAAAGCCCCcgacaacaaaaacacaagtaTGGAGAGCGGGAGTGAAGCCGAACCCCCTGTCTCCACCACTCTGGAGGTCATCAGTGAGTCTCTGGAAAGTGAGCCTAACGTTCAAGTGGCTCCACAGGAAGTGACCGTCAGCAGAGAAGTGGAGTCATCTTTATAAGGAAGAATGAATACAAAGAATTCATTAATAAAGATaccacaaaacataaatatatccAAAAGGACTTGCAAATTTGATGAATTAGAAAATCAGAGCCATTTGAGACAAAGAGGGATGCACCAATCCGATGTTGAGCATCAATATCGAAACGCTGGATCATATTGGATCTGATTTGACACATCATCTGACCActtgctgtattttatttcatcaagAGATATCGACTGAacttgcatgtaaacacagaaCACAAATCTTTGCGCACACCTCTCGACAGAAGCTAACTGAGGGACAGCTAGCTCACTGTGAAGACGCGTTGCACTCGGCGGCTGAGAGTGAAACCACAAGCAATGGTCATTATTTCTATACTAGCTCACCATTACCTGAAAGGGAATAATGGCAAATGGGGCGTTTAcccccacc
>XM_026923236.2
ACGAGAATCTGCCTTGTTCCGTGTGGAAACTTTGCCGGTCCGGGTGCAAAGTTTGAACTCCGTCTGCAAAACGCCGCTCGGTGCTTTTCTTCGTTTGTCACGATTCGCTTGAACGAGGCGCGAGACGTCGCGAGTGAGGTTTATCACCCGAGTTCTGTTGGGTTTTGCGGGAATAGATCAGAAGTGAAGGCGGAATCTCGTGTGACTGGGGTGAATTCGCTAGCCAGTGCCGGTTagcattgttttgtttgtatgttgtgttagctgtgcgtgtgtgtgtgtgcgtgtgtgtggtagCTGAGACGCTCTCGGAGGAAACCATGGCTTGTGAACCGAACCGCGCCCGGTTGCTGTGCATGCTGTCGTTAACGTTCGGGTTCTTCGTGGTCGAGGTGGTGGTGAGCCGGCTCACGGCGTCGCTCGCGATGCTCTCGGACTCCTTCCACATGCTGTCGGATGTGATGGCGCTGATCGTGGCGCTGGTGGCGGTGCGTTTCGCCGAGCGCACCCAGTCCACCAACAAGAACACGTTCGGCTGGATCCGCGCCGAGGTGATGGGCGCCCTGGTCAACGCCGTGTTCCTCACCGCGCTCTGCTTCACCATCGTGCTCGAGGCCATCGAGCGCTTCACCGAGCCGCACGAGATCGAGAGCCCGCTCGTGGTGATCGCCGTCGGGGCCGCGGGGCTCGTGGTGAACCTGCTAGGGCTGTGTCTCTTCCACGGCCACGCTCACTCGCACAGCCACGGCAAGGGGAAGCACTCCAGGGCGAACACCAGCAAGAGCGAGACCTCCACTGACTGCGGGTCCGCCGCGGAGGAGACCAACAACCTGGTCGGAGGTCCCGGGAGCAGCAGCCCGAACGGCGTGAACACCGAGAGCAGGGGAGCCTCCGAGTTATCAGCTGTGCAGCTGAACGGTGAGCTGGATCACGAGCACGACCTTGAGCATGATCATGATTCATCCTCGTCATCCCAGCTGAACATGCGTGGTGTTTTCCTTCATGTTCTGGGTGACGCGCTTGGCTCCGTCATCGTCGTGGTCAACGCCATCATCTTCACCTTTGTGTGGCGTCCGTGTGACCCCGGTGTTCCCTGCAACAACCCATGCAGTgccaacacacactgcagtgacCACCAACACCTTAACCACACGCTTGTGGGCTTTGGCGAGGCAGAAGACAGCAACGCGAGCGCCTCCGCATTCTCCACAGCTGGGCCCTGCTGGGTGCTGTACCTGGACCCGACTCTGTGCCTCATCATGGTCTGCATTCTTCTGTACACGACGTACCCGCTCTTGAAGGAGTCAGCGCTCATCCTGCTGCAGACTGTACCCAAGCAGATCGACGTGAGCCTCCTGAGCACTCGCCTGCGCCAGCTTGATGGCGTTCTGGCTGTGCACGAGCTCCATATCTGGCAGCTCGCCGGGAGTCGCATCATCGCCACGGCACACATCAAATGCCGAGACCCTGCCTCCTACATGAGTGTGGCCAAGCGCCTCAAGGCCTTCTTCCATGACGAGGGCATCCATGCCACCACCATCCAGCCTGAGTTCGTCATGGTGAGCTCTGAGTCACACGCCTCGCTCTGTGAGCTCTCCTGCCGCACGCAGTGCGCCGCTAAACTCTGCTGTCAAAATGCCAAAGCCCCcgacaacaaaaacacaagtaTGGAGAGCGGGAGTGAAGCCGAACCCCCTGTCTCCACCACTCTGGAGGTCATCAGTGAGTCTCTGGAAAGTGAGCCTAACGTTCAAGTGGCTCCACAGGAAGTGACCGTCAGCAGAGAAGTGGAGTCATCTTTATAAGGAAGAATGAATACAAAGAATTCATTAATAAAGATaccacaaaacataaatatatccAAAAGGACTTGCAAATTTGATGAATTAGAAAATCAGAGCCATTTGAGACAAAGAGGGATGCACCAATCCGATGTTGAGCATCAATATCGAAACGCTGGATCATATTGGATCTGATTTGACACATCATCTGACCActtgctgtattttatttcatcaagAGATATCGACTGAacttgcatgtaaacacagaaCACAAATCTTTGCGCACACCTCTCGACAGAAGCTAACTGAGGGACAGCTAGCTCACTGTGAAGACGCGTTGCACTCGGCGGCTGAGAGTGAAACCACAAGCAATGGTCATTATTTCTATACTAGCTCACCATTACCTGAAAGGGAATAATGGCAAATGGGGCGTTTAcccccacc

Function

symbol description
slc30a1 Predicted to enable calcium channel inhibitor activity and zinc ion transmembrane transporter activity. Predicted to be involved in several processes, including cellular divalent inorganic cation homeostasis; inorganic cation transmembrane transport; and negative regulation of transport. Predicted to act upstream of or within in utero embryonic development. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and nuclear membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K14688 SLC30A1, ZNT1; solute carrier family 30 (zinc transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923235.2 True 2231 mRNA 0.56 2 12335292 12345693
XM_026923236.2 False 2228 mRNA 0.56 2 12335292 12345693

Neighbor

gene id symbol gene type direction distance location
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 276817 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 619953 11711429 ~ 11715339 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding downstream 637970 11692588 ~ 11697322 (-)
hsp90aa1.2 LOC108257811,LOC108411456,LOC101068853 coding downstream 642978 11686439 ~ 11692314 (-)
ppp2r5cb ppp2r5cb,LOC108257814,LOC108411434,LOC103025090,LOC107704375,LOC103369946 coding downstream 651112 11658684 ~ 11684180 (-)
nek2 nek2,LOC107712406 coding upstream 7185 12352878 ~ 12361063 (-)
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding upstream 19586 12365279 ~ 12412879 (-)
ints7 ints7,LOC107659878,LOC107685756 coding upstream 68613 12414306 ~ 12433569 (-)
LOC113531824 NA coding upstream 194836 12540529 ~ 12549262 (-)
hsp90ab1 hsp90ab1 coding upstream 267272 12612965 ~ 12619954 (-)
G294461 NA non-coding downstream 91 12330413 ~ 12335201 (-)
G294320 NA non-coding downstream 199848 12135243 ~ 12135444 (-)
G294303 NA non-coding downstream 227132 12107942 ~ 12108160 (-)
G294300 NA non-coding downstream 232646 12102422 ~ 12102646 (-)
LOC117599805 NA non-coding downstream 288949 12039551 ~ 12046343 (-)
G294482 NA non-coding upstream 40004 12385697 ~ 12386315 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding upstream 252680 12598373 ~ 12603091 (-)
G294854 NA non-coding upstream 496830 12842523 ~ 12860847 (-)
G294966 NA non-coding upstream 772172 13117865 ~ 13118370 (-)
G295013 NA non-coding upstream 837819 13183512 ~ 13183817 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 17356 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 89114 12242579 ~ 12246178 (-)
G294369 NA other downstream 93391 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 115868 12095418 ~ 12219424 (-)
saysd1 saysd1 other downstream 259784 12068969 ~ 12075508 (-)
tmem151ba tmem151b other upstream 214297 12559990 ~ 12568837 (-)
LOC113531878 prkd3,LOC101070414 other upstream 1701505 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 2036394 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 2037888 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 2040922 14386615 ~ 14386696 (-)

Expression


Co-expression Network