ints7 (ints7,LOC107659878,LOC107685756)


Basic Information

Item Value
gene id ints7
gene name ints7,LOC107659878,LOC107685756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12414306 ~ 12433569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923785.2
ACGCCATATTATTTCGGAATACCGGTGTGAATATAACACTAAGCTGTATTTATGCAGCtagtttaaaataaagttaCTAAGTGCCATTCtcaaaaaggaagaaataatCCATTCTTGTGAAGAAAATGTCTCTTTCAACTGCGCGCTCTTTCTTGTCGGAGGCCGGTTATGGGGAACAGGAGTTAGATGCTAATTCGGCTCTCATGGAGCTGGACAAAGGCTTGAGATCATGCAATCTGGGGGAACAGTGTGAAGCTGTGGTcctctttcccaagctcttCCAGAAATATCCCTTCCCCATCCTCATCAACTCAGCCTTCCTGAAACTGGCCGATATTTTCAGACTTGGGAACAACTTCCTCCGGATGTGTGTGCTGAAAGTGACCCAGCAGAGTGAGAAGCACCTGGAGAAGATCCTGAACGTGGACGAGTTTGTTAAACGAGTCTTTTCTGTCATCCACAGTAATGATCCCGTAGCCAGAGCCATCACACTCAGAATGCTGGGCAGCCTGGCGTCCATTATCCCGGAAAGGAAAAACGCCCATCACAGCATTCGCCAGAGCTTGGACTCCCATGACAACATGGAAGTGGAGGCCGCCATCTTTGCAGCAGCCAGTTTCTCATCCCACTCGAAagacTTTGCAGCGGGGATTTGCAACAAGATCAGTGAGATGATTCAAGGCCTGGCCACTCCAGTAGACCTGAAGTTAAAGCTGATCCCCATGCTCCAGTACATGCACCACGATGCTGCTTTGGCCTCCCGGAGCAGGGAGCTGCTGCAGAAGCTCGTATCCTCGTACCCCTCCACGCCCATGGTGATCGTCACACTGCACACCTTCACGCAGCTTTCCCTCTCAGCTCTCATCCACATCCCCAAACAGATTGATTTGCTTCTGCAGTATCTGAAGGAAGACCCGAGAAAAGCAGTGAAAAAACTCGCCATTCAGGACCTGAAACTCCTGGCTAAGAAAACTCCTCACATGTGGAGCAGAAAGAACATACAGatGTTGTGTGAGAGTGCCCTCAACACCCCTTATGATGGTCTAAAACTCGGCATGGCCTCTGTCCTCTCTACACTCTCTGGAACCGTTGCCATCAAGCAGTACTTCAGCCCTACCACAGGTGAATCCCCACCATCTCCTCACCTGACTGATATTGTCAAGCTGGCGCAGGAGTgctgttaccatagcaacctgGCCGTGGCGGCTCACGGCATAACTGTGCTAGCTAACATTGCCATTTCCTGCCCTGAGAAAGATGTTGTACAGTTGGAGCAGGACACGGTGATGGGGATGGAGTCTTTACTGTTGCTGTGCAGTCAGGACGACAGTGCGTCCGCTCAGACCACGCTGAAAaCGGTGCTGGTGTGTCTGGTGAGGATGTTGAGGGCGCGTCCTCTCCTCAGTCAGATGTGTGTAGAGCTCCTCTTGGCACAGCTGCATCACTCCTGTGACTCGGCGTGCACTGCTATCTGCCATGCTCTGGCCGCCATCGTTACTCAGCTGCCAGTGCTGGGGGAGAGCATGCTGGGAAATCTTTTGGAGCTGTACAGCAGTGCCACTCACAGGAGCTCTGATAAACAGCAGGAAATTTTGgTGTGTTTGGCTACAGTGGTGTTTGTGGCAAGTCAGTCGTCTCTGAGTGCTGAGGTAAAAGCCGTGATTCGACCGCAGCTGGAAGCCTCGGCTAATGGCTGGACCGTCTACCGCATTGCACGTCAGGCCTCGCGCATGGGCTGCCACGAGTTCTCCAGCGAGCTGTACCAAAGTCTGCGCACACGCGTTGCCTCTGAGCACTTCTACTTCTGGCTGAACGCACTGATGGAGTTCTCGCAGGCTGAGCACTGCCTGACCGGCCTGACTGACGGAGACTACAGCGGAGCCATCAGTGCCATCACCGATGCCCTCAAATCCTACCAGAAAGGCTTCACTTCCCTCACGGCTGCAAGCACCCCTCTGAGTCCCCTGGTGTTCCAGTGTGAGTTTGTGAAGCTGCGAATTGACACGCTGCAGGCTCTGGCCCAGCTTATCTGCACCTGTAACAGCCTAAAGACGAGTCCTCCACCTGCCATTGCTGCCAGCATGGCCCTGTCCTCCGGGAATGAACTGCAGCGCTGCGGTCGCATCTCCCAGCagATGAAGCTCTCCATGGATGAATTCCGGAGTCTTGCCAGTCGCTACTCTGATTTGTACCAGTCCTCTTTTGATGCTGATTCAGCTACACTCCGAAATGTCGAACTGCAACAGCAGAGCTGCCTGCTTATCTCCTATGTGATTGAGGCTTTAATACTCGACCCTCACACTGCCAGTTTGCAGGATTTTGGCCCGCTGAGTTCAGTTCAGGCAGAGAGCAAGTATGAGCGCAGGATGCAGTCTGTGTTCAACCTCGTTCTGGAGGAAGTGGAGTCACTGAGCAGGAAGCACCCTCCTGTTTCTTACCTGCACACTGGCTGTCTGTGTGACGCTGTTATTGCTCTGCTTAAAGTGCCACTGTCCTTCCAGAGGTATTTCTTCCAAAAACTGCAGTCAACCAGTATCAAACTggctctgtctccatctcctcGCACACCCAATGAGCCAATCCCGGtgcagaacacacagcagctcacGCTAAAGGTTGAGGGAGTCATTCAGCACGGCTCCACTCCCGGCCTTTTCCGCAAAATCCTCTCGGTCTGCCTGAACGCCAGCTCCACGCTGCAGTCCAAACCTACTCCTGACTTCAAGATTCCTCTCGAGTCCAAGGCCAATGAGATCGAGCAGCAGGTGGAGCCTCATAACGACTACTTCAGCACTCAGTTCCTGCTGAACTTCTCTGTGCCGGGGACCCACAGTGTGACGGTGGAGGCGTGTGTGGTGGATGAGAGCGGGGTACAGTGGAAAACCGGGCCCAAGAGTACAGTGAGCGTTAAATCCATGGAGGATCCGTTCTCACAACAGCTCCGCCATCAGCAGGCTGGAGCTCAGGCAGCTCAGCGCAACGTCACCGCCCGCTTCCAGTAACATTTCAGCCTTGTGTTTCAGACGCCTGCATTTGTAGTTCATCCCTCTACCAGATGTCCATCCAGTGACACTTGCATTCTTGGTCCAGTGTTCAGACTAGCAAGTCTCACACTCaggttatgctgttataggaaaataaacaacgaTACCATGATCACTTTGAAGTGATAATATATTACAACTAGCGCATTACTAGAAACTTGTgatttggcttttctatatttgttatagaaaaataaagcaaCATCCTTCTTAccaatcaggtttgagaattcaacaaatGGTAGGAGCAAAAAATGTCTACGTTCTACTGTATAATTTCTACACATGACCGATTTACTTCTGTTTAAAgaagcagtttgtcatttttgtgcTTTCTGATGCCTATGAGGTAAAATGCATTTGCAAAGAAAACTTTCTACCCCTCCAGATCGACCTCACCCTCCTCTGTTGAAACAATGTATGCCTTTTTATGGGGCAAAGGAAGAGGTGAGCAGTTCTCTTTCAGATGGGAGCTAATTTACagacctggaaaaaaaaagccctgttTCTTTGATATTTTGTAATTAcaggttttgaaaaaaaaaattcaaatgttaaaaatttatTAAGTTTAAactttgttgttaataataataaaaaaagggtCTTTcaatttaaatcatgtttttaccTGAAACAGCTGAATGTGAACTAAACTTAGAGAGGAACTGGGAGGAAAAGTAGAGAATTTGGAGGAATTAGTCAGAGAAATGTACTGAAATCATGAATGTGGTTTGTTCCTTTTATGGCAATTgaattcatttgcataaaatgaagaaaatctcAATTGAAATATCGCTTCTTTCTGGAGCGCTGTGTCACATTTATACAAGTAGCCAGTTGAAGGAACACAGATGACCAGAACAGTCTGCTTCGAGATATCTAACCTTTCAAGCGTGTGATTTCTTTACAAAGTGCTCGTCATGTATTGCTGATGTTTTTGCATAGCTACATGCCAAAGCAAAATGGACGCAAACCTAATCAGATCTATTGTAATCAAATATGCAGTCGGGATTGAAACTTTTCACACTGCAATTTTCTCATGGGTAAGAAAAAAATTCCTCCgctgcatattttaaatattctaacTGCTATCATGCAGTCTATTTAATTAGCATAAGGCTGGGAATGGGATCTGTACAATATGTtctgttgtctgtgtgtgttgtcattTTTGTGCTCATGCAGCCTCCTACGTGTACAGCGTATTCTCCTGGCAGCTGTTAGGTTCACTGTGCTGGCTGTGTAGATGACTAACGATGAGGTGTTGAGTTAATCAAACTTCTGGAATCTGTACCTCATTGTTCAGTTCAGCAGAATGTAGACCATTGCTGTGCATTCCCAGTCATGCCCACACCCTTAAAGCACCTCAGCTGCCACTTTTTTGTGCCTATTTCAAGCGTAGCAACTGTTCTACAGTCTGTTCCATAAACATAAGGCTGAATACGGATGAGCTCTGTGGAATAAATTCTCTGATGAAACTGCAGCAAGACTCTACTTGCTTCTACTGACGTTATTTTGACATCATACAGTATAGGCCACCGTGTGGATTTGGATATAGCTACGTTCTGACTGTGACatctccaaaacacacacacacttcagaatgtATACACATGAATGCTTTCAAGATGTTGTGAGTCACATCCCGATTTCAATCATATGTCAAAAAAGCATCTAGGGGACAAACTAGTatgatttttcttgttttagttttctttattgtcattgttctttttattgatttgtgaatttatttttttgtagcatAGCATAAACCTAAGCTCATTGTATAATCTTTATTGTACAAACATACAAACTGATcttgatatgatttttttttccccagacatGCAACTTAACTGTCGTTAATCTTTACAGTGCAGGCCACTGGGTGATTCTGTGATTAAATCATCATCTGTTTGATCCAAA

Function

symbol description
ints7 Acts upstream of or within lens development in camera-type eye. Predicted to be located in chromosome and nucleus. Predicted to be part of integrator complex. Orthologous to human INTS7 (integrator complex subunit 7).

NR:

description
PREDICTED: integrator complex subunit 7

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component

KEGG:

id description
K13144 INTS7; integrator complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923785.2 True 4976 mRNA 0.47 20 12414306 12433569

Neighbor

gene id symbol gene type direction distance location
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding downstream 1427 12365279 ~ 12412879 (-)
nek2 nek2,LOC107712406 coding downstream 53243 12352878 ~ 12361063 (-)
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding downstream 68613 12335292 ~ 12345693 (-)
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 355831 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 698967 11711429 ~ 11715339 (-)
LOC113531824 NA coding upstream 106960 12540529 ~ 12549262 (-)
hsp90ab1 hsp90ab1 coding upstream 179396 12612965 ~ 12619954 (-)
eif2s1b eif2s1,eif2s1b,LOC108426300 coding upstream 206578 12640147 ~ 12647693 (-)
gphnb gphnb,gphn,LOC106571666,LOC106608213,LOC107669455 coding upstream 222685 12656254 ~ 12783288 (-)
fut8b fut8,LOC108257543,LOC107726710,LOC107669464,LOC107730784,LOC107559123 coding upstream 414278 12847847 ~ 12967115 (-)
G294482 NA non-coding downstream 27991 12385697 ~ 12386315 (-)
G294461 NA non-coding downstream 79105 12330413 ~ 12335201 (-)
G294320 NA non-coding downstream 278862 12135243 ~ 12135444 (-)
G294303 NA non-coding downstream 306146 12107942 ~ 12108160 (-)
G294300 NA non-coding downstream 311660 12102422 ~ 12102646 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding upstream 164804 12598373 ~ 12603091 (-)
G294854 NA non-coding upstream 408954 12842523 ~ 12860847 (-)
G294966 NA non-coding upstream 684296 13117865 ~ 13118370 (-)
G295013 NA non-coding upstream 749943 13183512 ~ 13183817 (-)
G295076 NA non-coding upstream 874620 13308189 ~ 13311601 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 96370 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 168128 12242579 ~ 12246178 (-)
G294369 NA other downstream 172405 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 194882 12095418 ~ 12219424 (-)
saysd1 saysd1 other downstream 338798 12068969 ~ 12075508 (-)
tmem151ba tmem151b other upstream 126421 12559990 ~ 12568837 (-)
LOC113531878 prkd3,LOC101070414 other upstream 1613629 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 1948518 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 1950012 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 1953046 14386615 ~ 14386696 (-)

Expression


Co-expression Network