G294966


Basic Information

Item Value
gene id G294966
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13117865 ~ 13118370 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU349388
CTTTAAAGTACTGCTGTAGAAATGCAATACAGGGCAACTTGTACTCTCtgaacagcaataaaaaaaaagaataataaatataaactactTTACAGTACAGGGAATTTATAAAGCGACACACTAAATCCAGCAGACCACCAACAGACCAATGCACGTGTTTCATTaatctcttcttctttttttttagctgtactACTCTTTAGACAGCAACAAATTATCAGCATGCGAGACGGTGGAAAAAGTGGCACGCGCTCACCGGGAGGAAGCCGCCGCTTTAATCCACACGCGCAGAagagatgctgctgctgctgatgatgatgatgatgatgatgctgatgatgatgatgatgatgatgtttcaGTCCGCGAGCGTCACCGCGCTTAAAATCCGTCCAGTGGCGTGACGTCTTAAATCTGAAAACTAGACATTCGAATCGTAAAAAcggagtttaaaaaaagatccGATTTCTGTACCGGAGGCAGAAACCAAAAGCGTCGCGAGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349388 True 506 lncRNA 0.43 1 13117865 13118370

Neighbor

gene id symbol gene type direction distance location
fut8b fut8,LOC108257543,LOC107726710,LOC107669464,LOC107730784,LOC107559123 coding downstream 150750 12847847 ~ 12967115 (-)
gphnb gphnb,gphn,LOC106571666,LOC106608213,LOC107669455 coding downstream 334577 12656254 ~ 12783288 (-)
eif2s1b eif2s1,eif2s1b,LOC108426300 coding downstream 470172 12640147 ~ 12647693 (-)
hsp90ab1 hsp90ab1 coding downstream 497911 12612965 ~ 12619954 (-)
LOC113531824 NA coding downstream 568603 12540529 ~ 12549262 (-)
trnar-ucu_10 NA coding upstream 13813 13132183 ~ 13132274 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding upstream 82300 13200670 ~ 13248082 (-)
cpsf2 cpsf2,LOC107704064 coding upstream 141702 13260072 ~ 13271801 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding upstream 156409 13274779 ~ 13284395 (-)
ints9 ints9 coding upstream 198680 13317050 ~ 13335881 (-)
G294854 NA non-coding downstream 257018 12842523 ~ 12860847 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding downstream 514774 12598373 ~ 12603091 (-)
G294482 NA non-coding downstream 731550 12385697 ~ 12386315 (-)
G294461 NA non-coding downstream 782664 12330413 ~ 12335201 (-)
G294320 NA non-coding downstream 982421 12135243 ~ 12135444 (-)
G295013 NA non-coding upstream 65142 13183512 ~ 13183817 (-)
G295076 NA non-coding upstream 189819 13308189 ~ 13311601 (-)
G295183 tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180 non-coding upstream 335023 13453393 ~ 13455003 (-)
G295185 NA non-coding upstream 340624 13458994 ~ 13462373 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding upstream 398191 13516561 ~ 13530188 (-)
tmem151ba tmem151b other downstream 549028 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 799929 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 871687 12242579 ~ 12246178 (-)
G294369 NA other downstream 875964 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 898441 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 928828 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 1263717 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 1265211 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 1268245 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 1473765 14592135 ~ 14592475 (-)

Expression


Co-expression Network