G295013


Basic Information

Item Value
gene id G295013
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13183512 ~ 13183817 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU349435
gaaacattaaaaatgagGCAGACGTTAAGGAGGCAGATATGCTGCCCCTCATAAACAATGGCAGGAGTACCAGCGTTAATTGTAAGCATGCTAATGTTGCTTATGTTATATTGTACTGTTGATTCACGTGTCTCAAACTGGTGCTCACTTCTGGTTCATACTAAGTGGGCATATGTTCAAATGGTTTTGTTGATGGCCCTGGAGAGGCAGGTTATTTACATGTAGATATATGAGCTCTGAGGCTGTGATCACTTAGTGCAGTGATGGTAAGTGTGGAAGTGCAGCAAAGTAGAGGCCAGAGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349435 True 306 lncRNA 0.42 1 13183512 13183817

Neighbor

gene id symbol gene type direction distance location
trnar-ucu_10 NA coding downstream 51238 13132183 ~ 13132274 (-)
fut8b fut8,LOC108257543,LOC107726710,LOC107669464,LOC107730784,LOC107559123 coding downstream 216397 12847847 ~ 12967115 (-)
gphnb gphnb,gphn,LOC106571666,LOC106608213,LOC107669455 coding downstream 400224 12656254 ~ 12783288 (-)
eif2s1b eif2s1,eif2s1b,LOC108426300 coding downstream 535819 12640147 ~ 12647693 (-)
hsp90ab1 hsp90ab1 coding downstream 563558 12612965 ~ 12619954 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding upstream 16853 13200670 ~ 13248082 (-)
cpsf2 cpsf2,LOC107704064 coding upstream 76255 13260072 ~ 13271801 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding upstream 90962 13274779 ~ 13284395 (-)
ints9 ints9 coding upstream 133233 13317050 ~ 13335881 (-)
hmbox1b hmbox1,LOC108257777 coding upstream 195181 13378998 ~ 13400477 (-)
G294966 NA non-coding downstream 65142 13117865 ~ 13118370 (-)
G294854 NA non-coding downstream 322665 12842523 ~ 12860847 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding downstream 580421 12598373 ~ 12603091 (-)
G294482 NA non-coding downstream 797197 12385697 ~ 12386315 (-)
G294461 NA non-coding downstream 848311 12330413 ~ 12335201 (-)
G295076 NA non-coding upstream 124372 13308189 ~ 13311601 (-)
G295183 tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180 non-coding upstream 269576 13453393 ~ 13455003 (-)
G295185 NA non-coding upstream 275177 13458994 ~ 13462373 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding upstream 332744 13516561 ~ 13530188 (-)
G295197 NA non-coding upstream 399170 13582987 ~ 13584266 (-)
tmem151ba tmem151b other downstream 614675 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 865576 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 937334 12242579 ~ 12246178 (-)
G294369 NA other downstream 941611 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 964088 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 863381 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 1198270 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 1199764 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 1202798 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 1408318 14592135 ~ 14592475 (-)

Expression


Co-expression Network