hmbox1b (hmbox1,LOC108257777)


Basic Information

Item Value
gene id hmbox1b
gene name hmbox1,LOC108257777
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13378998 ~ 13400477 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922623.2
TCAGACAAAAGGCGAGACAGTCCGCCTCTCTGATTGAACCCGAGCGAGCAGGGCCGGGGCAGGGctgcagaaaaataaatgcaggatattcaaatgtgaaaaataaactgGATTTGTCTGTCGTCAGCACTCGGTGAAGTCATTAAATGCTCTGCTGGGCTGGGACGTTTGCAATATTCACACGTAGCCTAAAGGATGTCCCAGTACACAGACGAGCCGCGCTTCACCATCGAGCAGATCGATCTGCTGCAGCGGCTGCGGCGGAGCGGCATGACCAAGCCCGAGATAGTCCACGCACTGGACACACTGGAGCGTCTCGACAGAGAGCATGGAGACAAGTTTGGGCGCCGTGgctccgcctcctcctcctgtgGCCCTGCTCCCTCTGTATCTGACCCTGCCCCCTCACATGGCACAAATGAAAGCTCCACCTCCCACATGGCTATCTCTACTGCCACCACCGCTACGCAGACTCAGTTCCTCTCTCCGTCACCAAGCAACAGCTACGCCACCTCACCACCCGTCTCACTGGTTGCTGTGACGCAAAATGGGACAGCCAATGGGAAACTGTCTCCACCCCGTTATCCGGCAGGAAACGCAGCAGCGGCCGTGGCGGTGAGACCATATGGGTTTGATGGAACAGAGGAAGAGATGGATGTTGATGACAAGGTGGAGGACCTGATGAGgAGGGACAGCAGTTTGGTGAAAGAGGAGATCAAGGCTTTTCTGGCTAACAGGCGTATCTCTCAGGCAGTGGTGGCCCAGGTCACAGgaatCAGTCAGAGTCGGATCTCCCACTGGCTCCTGCAGCAGGGATCCGATCTGAGTGAGCAAAAGAAGAGAGCCTTCTATCGCTGGTACCAGCTGGAAAAGACCACTCCAGgTGCTACTCTGAACATGCGTCCTGCCCCGATGACCCTGGATGAAATTGAGTGGCGTCAGACTCCACCCCCAATAAGTTCAGCCACAGGCAGCTTCCGTCTGCGCAGAGGCAGCCGCTTCACCTGGAGGAAGGAGTGTCTCGCTGTTATGGAGAGCTACTTCAATGACAACCAGTATCCTGATGAAGCCAAAAGAGAGGAGATTGCCAACGCTTGCAATGCTGTCATACAAAAGCCAGGGAAAAAGCTGTCTGATTTTGAGCGAGTAACATCCTTGAAGGTCTACAACTGGTTTGCTAACCGTCGCAAAGAGATCAAGAGGAGGGCCAATATTGGGTCTTTTTTCCAAGAAGCCACAATCCTGGAGAGTCATGGAATCGATGTGCAGAGCCCTGGCGGCCACTCCAACAGTGACGACATCGACGGCAACGACTACACCGAGCAGGGTTGTGATTTGCCCTACTTTGAGAAGAGACAGTTGGCCCGGCCGTTTGGGTTCTACAGGCTTGAGCCAACATCGCCAACCCAGgATGACAGCACTAACCATGCAGACCATCAAGATCCCATCTCCCTCGCTGTGGAGATggcagctgtcaatcacagcattTTGGCCCTGTCTCGCCCAGGGGGCGTGGCCAGCGATATCAAAACAGAGGCGCTGGACGATGACTGAGGAGGGCCTGCTggatggagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgcgtgcgcgtgcgtgcgcgtgtgtgtgtgtgcgtgtgtgtggagaaATGGATGTGTGCTGTTTTGTTTCCAGTGCAGAGGTCGACTCTCGTGATGACTCCATGCTGCTCAGACGTGGGTCAATCTCTTCCTCTGCATCCTCTCATTACACTGTATCTGAAAATGGCCATCTAGTCCAGGTTCTGTTCCTCAGCCTGggactgtgtttaaaaaaaacaaaacaaaaacacacgaAGGTCCTCATgttttctggaatcttccacaGTGTGGGGCCGCCACCTCTGGCCCTTCCTTTAACCTGACCCCAACCTTTACCTCATTCCGCTCCAGGAGTGTGTCGTGCTTTTTGCGTTTCGTCCCTCATCGGTGCTTCCTGGAAGTGGCGTTGTCTTTTCCGCCGATGTGCAGGAATTTTTTGCGGACATTTGACGtcggtgtgtgagagtgtgtgaagcTTTTTAGGTGGAATGGAAAAGCGTGTGTGCTGCACAGCCTCGTGGATGTGTACCAGACGTAAGACTTCTGCATTGACTGACAGCTCTGTGTATTTAGGCGCTTGAACACTTTTATTCCCTCTTAAAGTTGGcttggttttattattattattattattattattattattactattactattacttttattattttagaatcGATTTTAGTTCACGGTTCAAACATCAATCAGat
>XM_026922625.2
TCAGACAAAAGGCGAGACAGTCCGCCTCTCTGATTGAACCCGAGCGAGCAGGGCCGGGGCAGGGctgcagaaaaataaatgcaggatattcaaatgtgaaaaataaactgGATTTGTCTGTCGTCAGCACTCGGTGAAGTCATTAAATGCTCTGCTGGGCTGGGACGTTTGCAATATTCACACGTAGCCTAAAGGATGTCCCAGTACACAGACGAGCCGCGCTTCACCATCGAGCAGATCGATCTGCTGCAGCGGCTGCGGCGGAGCGGCATGACCAAGCCCGAGATAGTCCACGCACTGGACACACTGGAGCGTCTCGACAGAGAGCATGGAGACAAGTTTGGGCGCCGTGgctccgcctcctcctcctgtgGCCCTGCTCCCTCTGTATCTGACCCTGCCCCCTCACATGGCACAAATGAAAGCTCCACCTCCCACATGGCTATCTCTACTGCCACCACCGCTACGCAGACTCAGTTCCTCTCTCCGTCACCAAGCAACAGCTACGCCACCTCACCACCCGTCTCACTGGTTGCTGTGACGCAAAATGGGACAGCCAATGGGAAACTGTCTCCACCCCGTTATCCGGCAGGAAACGCAGCAGCGGCCGTGGCGGTGAGACCATATGGGTTTGATGGAACAGAGGAAGAGATGGATGTTGATGACAAGGTGGAGGACCTGATGAGgAGGGACAGCAGTTTGGTGAAAGAGGAGATCAAGGCTTTTCTGGCTAACAGGCGTATCTCTCAGGCAGTGGTGGCCCAGGTCACAGgaatCAGTCAGAGTCGGATCTCCCACTGGCTCCTGCAGCAGGGATCCGATCTGAGTGAGCAAAAGAAGAGAGCCTTCTATCGCTGGTACCAGCTGGAAAAGACCACTCCAGgTGCTACTCTGAACATGCGTCCTGCCCCGATGACCCTGGATGAAATTGAGTGGCGTCAGACTCCACCCCCAATAAGTTCAGCCACAGGCAGCTTCCGTCTGCGCAGAGGCAGCCGCTTCACCTGGAGGAAGGAGTGTCTCGCTGTTATGGAGAGCTACTTCAATGACAACCAGTATCCTGATGAAGCCAAAAGAGAGGAGATTGCCAACGCTTGCAATGCTGTCATACAAAAGCCAGGGAAAAAGCTGTCTGATTTTGAGCGAGTAACATCCTTGAAGGTCTACAACTGGTTTGCTAACCGTCGCAAAGAGATCAAGAGGAGGGCCAATATTGAAGCCACAATCCTGGAGAGTCATGGAATCGATGTGCAGAGCCCTGGCGGCCACTCCAACAGTGACGACATCGACGGCAACGACTACACCGAGCAGGGTTGTGATTTGCCCTACTTTGAGAAGAGACAGTTGGCCCGGCCGTTTGGGTTCTACAGGCTTGAGCCAACATCGCCAACCCAGgATGACAGCACTAACCATGCAGACCATCAAGATCCCATCTCCCTCGCTGTGGAGATggcagctgtcaatcacagcattTTGGCCCTGTCTCGCCCAGGGGGCGTGGCCAGCGATATCAAAACAGAGGCGCTGGACGATGACTGAGGAGGGCCTGCTggatggagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgcgtgcgcgtgcgtgcgcgtgtgtgtgtgtgcgtgtgtgtggagaaATGGATGTGTGCTGTTTTGTTTCCAGTGCAGAGGTCGACTCTCGTGATGACTCCATGCTGCTCAGACGTGGGTCAATCTCTTCCTCTGCATCCTCTCATTACACTGTATCTGAAAATGGCCATCTAGTCCAGGTTCTGTTCCTCAGCCTGggactgtgtttaaaaaaaacaaaacaaaaacacacgaAGGTCCTCATgttttctggaatcttccacaGTGTGGGGCCGCCACCTCTGGCCCTTCCTTTAACCTGACCCCAACCTTTACCTCATTCCGCTCCAGGAGTGTGTCGTGCTTTTTGCGTTTCGTCCCTCATCGGTGCTTCCTGGAAGTGGCGTTGTCTTTTCCGCCGATGTGCAGGAATTTTTTGCGGACATTTGACGtcggtgtgtgagagtgtgtgaagcTTTTTAGGTGGAATGGAAAAGCGTGTGTGCTGCACAGCCTCGTGGATGTGTACCAGACGTAAGACTTCTGCATTGACTGACAGCTCTGTGTATTTAGGCGCTTGAACACTTTTATTCCCTCTTAAAGTTGGcttggttttattattattattattattattattattattactattactattacttttattattttagaatcGATTTTAGTTCACGGTTCAAACATCAATCAGat
>XM_026922626.2
TCAGACAAAAGGCGAGACAGTCCGCCTCTCTGATTGAACCCGAGCGAGCAGGGCCGGGGCAGGGctgcagaaaaataaatgcaggatattcaaatgtgaaaaataaactgGATTTGTCTGTCGTCAGCACTCGGTGAAGTCATTAAATGCTCTGCTGGGCTGGGACGTTTGCAATATTCACACGTAGCCTAAAGGATGTCCCAGTACACAGACGAGCCGCGCTTCACCATCGAGCAGATCGATCTGCTGCAGCGGCTGCGGCGGAGCGGCATGACCAAGCCCGAGATAGTCCACGCACTGGACACACTGGAGCGTCTCGACAGAGAGCATGGAGACAAGTTTGGGCGCCGTGgctccgcctcctcctcctgtgGCCCTGCTCCCTCTGTATCTGACCCTGCCCCCTCACATGGCACAAATGAAAGCTCCACCTCCCACATGGCTATCTCTACTGCCACCACCGCTACGCAGACTCAGTTCCTCTCTCCGTCACCAAGCAACAGCTACGCCACCTCACCACCCGTCTCACTGGTTGCTGTGACGCAAAATGGGACAGCCAATGGGAAACTGTCTCCACCCCGTTATCCGGCAGGAAACGCAGCAGCGGCCGTGGCGGTGAGACCATATGGGTTTGATGGAACAGAGGAAGAGATGGATGTTGATGACAAGGTGGAGGACCTGATGAGgAGGGACAGCAGTTTGGTGAAAGAGGAGATCAAGGCTTTTCTGGCTAACAGGCGTATCTCTCAGGCAGTGGTGGCCCAGGTCACAGgaatCAGTCAGAGTCGGATCTCCCACTGGCTCCTGCAGCAGGGATCCGATCTGAGTGAGCAAAAGAAGAGAGCCTTCTATCGCTGGTACCAGCTGGAAAAGACCACTCCAGgTGCTACTCTGAACATGCGTCCTGCCCCGATGACCCTGGATGAAATTGAGTGGCGTCAGACTCCACCCCCAATAAGTTCAGCCACAGGCAGCTTCCGTCTGCGCAGAGGCAGCCGCTTCACCTGGAGGAAGGAGTGTCTCGCTGTTATGGAGAGCTACTTCAATGACAACCAGTATCCTGATGAAGCCAAAAGAGAGGAGATTGCCAACGCTTGCAATGCTGTCATACAAAAGCCAGGGAAAAAGCTGTCTGATTTTGAGCGAGTAACATCCTTGAAGGTCTACAACTGGTTTGCTAACCGTCGCAAAGAGATCAAGAGGAGGGCCAATATTGCCACAATCCTGGAGAGTCATGGAATCGATGTGCAGAGCCCTGGCGGCCACTCCAACAGTGACGACATCGACGGCAACGACTACACCGAGCAGGGTTGTGATTTGCCCTACTTTGAGAAGAGACAGTTGGCCCGGCCGTTTGGGTTCTACAGGCTTGAGCCAACATCGCCAACCCAGgATGACAGCACTAACCATGCAGACCATCAAGATCCCATCTCCCTCGCTGTGGAGATggcagctgtcaatcacagcattTTGGCCCTGTCTCGCCCAGGGGGCGTGGCCAGCGATATCAAAACAGAGGCGCTGGACGATGACTGAGGAGGGCCTGCTggatggagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtgcgtgcgcgtgcgtgcgcgtgtgtgtgtgtgcgtgtgtgtggagaaATGGATGTGTGCTGTTTTGTTTCCAGTGCAGAGGTCGACTCTCGTGATGACTCCATGCTGCTCAGACGTGGGTCAATCTCTTCCTCTGCATCCTCTCATTACACTGTATCTGAAAATGGCCATCTAGTCCAGGTTCTGTTCCTCAGCCTGggactgtgtttaaaaaaaacaaaacaaaaacacacgaAGGTCCTCATgttttctggaatcttccacaGTGTGGGGCCGCCACCTCTGGCCCTTCCTTTAACCTGACCCCAACCTTTACCTCATTCCGCTCCAGGAGTGTGTCGTGCTTTTTGCGTTTCGTCCCTCATCGGTGCTTCCTGGAAGTGGCGTTGTCTTTTCCGCCGATGTGCAGGAATTTTTTGCGGACATTTGACGtcggtgtgtgagagtgtgtgaagcTTTTTAGGTGGAATGGAAAAGCGTGTGTGCTGCACAGCCTCGTGGATGTGTACCAGACGTAAGACTTCTGCATTGACTGACAGCTCTGTGTATTTAGGCGCTTGAACACTTTTATTCCCTCTTAAAGTTGGcttggttttattattattattattattattattattattactattactattacttttattattttagaatcGATTTTAGTTCACGGTTCAAACATCAATCAGat

Function

symbol description
hmbox1 Enables double-stranded telomeric DNA binding activity; identical protein binding activity; and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II; positive regulation of telomerase activity; and positive regulation of telomere maintenance via telomerase. Located in several cellular components, including centrosome; chromosome, telomeric region; and nuclear body.

NR:

description
homeobox-containing protein 1

GO:

id name namespace
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922623.2 True 2315 mRNA 0.52 10 13378998 13400477
XM_026922625.2 False 2300 mRNA 0.52 10 13378998 13400477
XM_026922626.2 False 2297 mRNA 0.52 10 13378998 13400477

Neighbor

gene id symbol gene type direction distance location
ints9 ints9 coding downstream 43117 13317050 ~ 13335881 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding downstream 94603 13274779 ~ 13284395 (-)
cpsf2 cpsf2,LOC107704064 coding downstream 107197 13260072 ~ 13271801 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding downstream 130916 13200670 ~ 13248082 (-)
trnar-ucu_10 NA coding downstream 246724 13132183 ~ 13132274 (-)
cd109 cd109 coding upstream 284785 13685262 ~ 13722851 (-)
crnkl1 crnkl1,LOC102779463 coding upstream 327523 13728000 ~ 13735421 (-)
nkx2.4b LOC108257947 coding upstream 494784 13895261 ~ 13898028 (-)
LOC113532178 LOC108257557 coding upstream 603667 14004144 ~ 14007382 (-)
cebpz cebpz,LOC104960473 coding upstream 619650 14020127 ~ 14032106 (-)
G295076 NA non-coding downstream 67397 13308189 ~ 13311601 (-)
G295013 NA non-coding downstream 195181 13183512 ~ 13183817 (-)
G294966 NA non-coding downstream 260628 13117865 ~ 13118370 (-)
G294854 NA non-coding downstream 518151 12842523 ~ 12860847 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding downstream 775907 12598373 ~ 12603091 (-)
G295183 tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180 non-coding upstream 52916 13453393 ~ 13455003 (-)
G295185 NA non-coding upstream 58517 13458994 ~ 13462373 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding upstream 116084 13516561 ~ 13530188 (-)
G295197 NA non-coding upstream 182510 13582987 ~ 13584266 (-)
G295235 NA non-coding upstream 281553 13682030 ~ 13682231 (-)
tmem151ba tmem151b other downstream 810161 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 1061062 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 1132820 12242579 ~ 12246178 (-)
G294369 NA other downstream 1137097 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 1159574 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 646721 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 981610 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 983104 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 986138 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 1191658 14592135 ~ 14592475 (-)

Expression


Co-expression Network