G295185


Basic Information

Item Value
gene id G295185
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13458994 ~ 13462373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU349648
GTCAGCTTTCTATCAGAACCTTTAGGTTTCACTCCAGCAAGCAACAACTTGCTGTACACCAAGACTCCTCAATTCCCATCCTGGAGACCCAAAGGCCAATACAGTCTGGCAATTTCTCTGCTGAATCTGGTAGCTGGAAAACAAAATTTCCTAGGGACTGGGAATGTAATACTGGGTTTGCTTATAACGTAGAGGTTGTTTAGGAAAACGGAGAAAATTATATGCTTTAGtaattcattttctcttttttcctaaaCAGTACTCCACCTTATAGGCAAACCTATCACCATATCATTCTTAACAGGGTATAAAGCATTTCAAAGAGAGGCAGAAGTCATGGGAAGCAGATTTTATTGTCCAGAGCTACATAGTTGTAGATTGGTCccattatgaaaatgaataaatatacagcTTGTAAACTCCTTACAACATATACATGGCCATTTCGGCAGAAATAATTCCAGgagtttttattcctttttctgTGGGAGCGCTGCCTTGACCAGCTCGTATATTACAAAGACAGTtcctataaaacaaaaaaaacagtgtcaGACCACAAGTAGTAAAgccaaattttatataaattaacacaattttaatctgtttgctCTACTGGAAATTATGCTGTTTGgggtttatatttatacatttatagctCACATAACATAAGGCAagaaactattattatttataccacagtgctgttgaattctcaaatctgattggtcacaaagtgttaattttctacaacagcagctctgttttgagtttttttcagtgacaagctacatttttttgtctcatgaacatcaagagaaagtgaggaaatgactgtttatgtCTATAACGTAAAAGgagttaatttttttccagagaCTTTCTTCAATATTAaacgtaaatataaatgtttaataaaaaaggatGATGTGGCGTgctgtgatataagagaaataaaacactccaggacaggctgttattggaaaaacaatcaactttggggAAGCAAAAGTGACTCCACTTCGCATCGGGCAAAATCAccccaccccatcgttgattattttactataacagcatgccttgttgcattttattccttacatggtGTAGTAATAATGTTTTGAGATCATTTATCAtcttaataaaatgtgtatgcTTACTCTACAGTAAAATGGAGGTTTAAagcttcattcattttctgtgtaaatGGAAGAATATTAATGAAGGGAAGGAAAGTCaacattttagttcattttagtACACGTGTAGTAAATCTTGAAGGTCAACTGATGATTATAATCTAGCAACCAgtgacacacacattctttcctCAAGTAAAGGTAGACTATTAGTTTCATAAAAGTGAAAGTGGTGCATCTAAAGAAGCCGTTTCTGTATAATTAATGGATTTTAAAAGGTAAGATACTTGCATGTCATGTAAACTGTAATTCTTAGCAGCATGCACAGGTTCTTAGCTCTGGGTCGACAGTAACAGCAGCACTATAAAGCggtatttttatttgattcagTGCACTAATGGCTGCACCATTTCACTACAGTGTGTAAGTAAAAAGGAAAGGATGGTGACTGAACAGGGCGTGGCCACTGTGCCGGTCAATCCTAGGGAGTTCTCTGGAGTTTTCTGACCTCCAGAGATAAAAGAAAGCTGTTCAAcataaagaaagacaaacagaacaacaaacagacacaacagTGAACCGTGTGTAAGTGCAGAACCCCCCAGATGTGGACATTATTATCCATTAGGAGAGAATAATCTGATCAAGTCACCTGGAACAGCTTTTGCTTCTGTGGAACTTTATTTTCCACCTGCCTGCGAGCGCTGCTAGTTAGCGTCCGCCGGGACAGCTGATGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349648 True 1877 lncRNA 0.37 3 13458994 13462373

Neighbor

gene id symbol gene type direction distance location
hmbox1b hmbox1,LOC108257777 coding downstream 58517 13378998 ~ 13400477 (-)
ints9 ints9 coding downstream 123113 13317050 ~ 13335881 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding downstream 174599 13274779 ~ 13284395 (-)
cpsf2 cpsf2,LOC107704064 coding downstream 187193 13260072 ~ 13271801 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding downstream 210912 13200670 ~ 13248082 (-)
cd109 cd109 coding upstream 222889 13685262 ~ 13722851 (-)
crnkl1 crnkl1,LOC102779463 coding upstream 265627 13728000 ~ 13735421 (-)
nkx2.4b LOC108257947 coding upstream 432888 13895261 ~ 13898028 (-)
LOC113532178 LOC108257557 coding upstream 541771 14004144 ~ 14007382 (-)
cebpz cebpz,LOC104960473 coding upstream 557754 14020127 ~ 14032106 (-)
G295183 tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180 non-coding downstream 3991 13453393 ~ 13455003 (-)
G295076 NA non-coding downstream 147393 13308189 ~ 13311601 (-)
G295013 NA non-coding downstream 275177 13183512 ~ 13183817 (-)
G294966 NA non-coding downstream 340624 13117865 ~ 13118370 (-)
G294854 NA non-coding downstream 598147 12842523 ~ 12860847 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding upstream 54188 13516561 ~ 13530188 (-)
G295197 NA non-coding upstream 120614 13582987 ~ 13584266 (-)
G295235 NA non-coding upstream 219657 13682030 ~ 13682231 (-)
G295287 NA non-coding upstream 316942 13779315 ~ 13780158 (-)
G295412 NA non-coding upstream 431957 13894330 ~ 13894847 (-)
tmem151ba tmem151b other downstream 890157 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 1141058 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 1212816 12242579 ~ 12246178 (-)
G294369 NA other downstream 1217093 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 1239570 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 584825 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 919714 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 921208 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 924242 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 1129762 14592135 ~ 14592475 (-)

Expression


Co-expression Network