G295183 (tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180)


Basic Information

Item Value
gene id G295183
gene name tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13453393 ~ 13455003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU349646
TTGTTTCCATctaattttatttctctgaaaCAAGGACGAACACATCCATAAAAGTGACCCAAATGACCAACATACAGCTGTGCCAAGCCTAAAGTGCAAACAACTGGACATGACATGAACATGATAACCTGTGACACTCATAAAAACTTCAAACCATAAAACCAAAAGcacccttttaaaaaaaaaaataataatttttaaaaaaaattaaaagacacTAAGGAGTGcatttaaataacacacacacaggtctagAGATATCTTTGAGTCAGGTCACGGCACTCTATAAACCATATAAGCAGGAATTCATTTTGATCCCAAATTGCTTAACAGAAAAGGAACTTTACACTGAATGTACTTCAGAGTTTGGTATTAATTATAGCCATTTCAGTGttagtcaatcagccaagaaaATGCATTCTGCACTGGAGCTGTAAGGCTTATGTTCGGCTGAACTACAGCTGTTAAAGAAGTTGACCTACTAGATTACGTGTCCTGTGGCAATTGCTGCAGGAACACTAGGCAGCAAGACTTAGGCAAGAATtcagctctgactgttataGCTTATATACATTCATTAAGTTTAATCaagtaaatgtttttgcaaagTCTCGCTTCTCACAGCGTGTTCAAATATATACACTTCAGATTATAGAAGCCCATAAGCCATactaaaatacagaaatactgactaaaaataaaattatgactTAATACAGAACACCATTGacctctttaaaaataaatacgcatacatatatatatataattcaacAACTGTTTTAAACATAATGCTCTGCAGAGCTGCACTCCAAGCACAatactcatatacacacaggacacacacagaggcaagCTCAGATGATAAGCGGTTGGTCTTCATCATGCATGTGGCAGACAGCATGCAGGTGATCACACGAAGCTAGTTGGGaatgtcagagctgttgttgcGGTTTCCGTATTTTTGGTGGATGAAGAGCAGGACGATTCCGAGGAAGAAGCAGACGGAGCCCACGGTGATGTAGGCGATGCCCAGGAAAGGGTTCTTTCCTCCCATCCACGAGATGGTGCTGAGGATCATGCGCTTTCGGCCATCGAAGCTGCGCACGGGATAATGTAACTGACTTCCAGAGTGTAGTTGCCTCTGGGAAGTGTTGGGgtcatgttgtttttcttctggATGATACGGTAGAGTTTCCTAAATGTGGGCAGGGCAGCCGTTCGCATCCACACGATGAAGTCTTCGTTAATGAAGCCGTTGTTCTCCGGGTCTGAATCCAGCTCAAAGACAGGCTTACGCCAGTTGACTGGTTTCGCAGTT

Function

symbol description
tmem30ab Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in transport vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and plasma membrane. Orthologous to human TMEM30A (transmembrane protein 30A).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349646 True 1321 lncRNA 0.41 2 13453393 13455003

Neighbor

gene id symbol gene type direction distance location
hmbox1b hmbox1,LOC108257777 coding downstream 52916 13378998 ~ 13400477 (-)
ints9 ints9 coding downstream 117512 13317050 ~ 13335881 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding downstream 168998 13274779 ~ 13284395 (-)
cpsf2 cpsf2,LOC107704064 coding downstream 181592 13260072 ~ 13271801 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding downstream 205311 13200670 ~ 13248082 (-)
cd109 cd109 coding upstream 230259 13685262 ~ 13722851 (-)
crnkl1 crnkl1,LOC102779463 coding upstream 272997 13728000 ~ 13735421 (-)
nkx2.4b LOC108257947 coding upstream 440258 13895261 ~ 13898028 (-)
LOC113532178 LOC108257557 coding upstream 549141 14004144 ~ 14007382 (-)
cebpz cebpz,LOC104960473 coding upstream 565124 14020127 ~ 14032106 (-)
G295076 NA non-coding downstream 141792 13308189 ~ 13311601 (-)
G295013 NA non-coding downstream 269576 13183512 ~ 13183817 (-)
G294966 NA non-coding downstream 335023 13117865 ~ 13118370 (-)
G294854 NA non-coding downstream 592546 12842523 ~ 12860847 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding downstream 850302 12598373 ~ 12603091 (-)
G295185 NA non-coding upstream 3991 13458994 ~ 13462373 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding upstream 61558 13516561 ~ 13530188 (-)
G295197 NA non-coding upstream 127984 13582987 ~ 13584266 (-)
G295235 NA non-coding upstream 227027 13682030 ~ 13682231 (-)
G295287 NA non-coding upstream 324312 13779315 ~ 13780158 (-)
tmem151ba tmem151b other downstream 884556 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 1135457 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 1207215 12242579 ~ 12246178 (-)
G294369 NA other downstream 1211492 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 1233969 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 592195 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 927084 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 928578 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 931612 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 1137132 14592135 ~ 14592475 (-)

Expression


Co-expression Network