G295235


Basic Information

Item Value
gene id G295235
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 13682030 ~ 13682231 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU349699
gacaatgttcagtgtgagtaagataggggtgatgtggtcagaTCTTCTGGTTCTAATAAGGACTCTGGCTGCTACATTTCGTAATACAACAGCCTTAGGTCTTAAAGCCAACACAACACaggaaatattgaaaatatttgttCTCATCTATAATGCTCAATTAAATCAGTTAAAGTTCTGAATTGGATGTTCTGACAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU349699 True 202 lncRNA 0.36 1 13682030 13682231

Neighbor

gene id symbol gene type direction distance location
hmbox1b hmbox1,LOC108257777 coding downstream 281553 13378998 ~ 13400477 (-)
ints9 ints9 coding downstream 346149 13317050 ~ 13335881 (-)
riox1 c25h14orf169,cunh14orf169,LOC107719421 coding downstream 397635 13274779 ~ 13284395 (-)
cpsf2 cpsf2,LOC107704064 coding downstream 410229 13260072 ~ 13271801 (-)
slc24a4b slc24a4,slc24a4b,LOC107704063,LOC107719386,LOC107559124,LOC107669463 coding downstream 433948 13200670 ~ 13248082 (-)
cd109 cd109 coding upstream 3031 13685262 ~ 13722851 (-)
crnkl1 crnkl1,LOC102779463 coding upstream 45769 13728000 ~ 13735421 (-)
nkx2.4b LOC108257947 coding upstream 213030 13895261 ~ 13898028 (-)
LOC113532178 LOC108257557 coding upstream 321913 14004144 ~ 14007382 (-)
cebpz cebpz,LOC104960473 coding upstream 337896 14020127 ~ 14032106 (-)
G295197 NA non-coding downstream 97764 13582987 ~ 13584266 (-)
G295168 col12a1,LOC108257731,LOC107559129,LOC107719381,LOC106571269 non-coding downstream 151842 13516561 ~ 13530188 (-)
G295185 NA non-coding downstream 219657 13458994 ~ 13462373 (-)
G295183 tmem30ab,LOC108257743,LOC107597847,LOC107721815,LOC107658180 non-coding downstream 227027 13453393 ~ 13455003 (-)
G295076 NA non-coding downstream 370429 13308189 ~ 13311601 (-)
G295287 NA non-coding upstream 97084 13779315 ~ 13780158 (-)
G295412 NA non-coding upstream 212099 13894330 ~ 13894847 (-)
LOC113531851 NA non-coding upstream 226676 13908907 ~ 13914020 (-)
G295491 NA non-coding upstream 427250 14109481 ~ 14109964 (-)
G295631 NA non-coding upstream 558165 14240396 ~ 14240536 (-)
tmem151ba tmem151b other downstream 1113193 12559990 ~ 12568837 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other downstream 1364094 12311682 ~ 12317936 (-)
LOC113531840 ccr6 other downstream 1435852 12242579 ~ 12246178 (-)
G294369 NA other downstream 1440129 12240989 ~ 12241901 (-)
LOC113532050 LOC108257549 other downstream 1462606 12095418 ~ 12219424 (-)
LOC113531878 prkd3,LOC101070414 other upstream 364967 14047198 ~ 14104645 (-)
trnas-gcu_10 NA other upstream 699856 14382087 ~ 14382348 (-)
trnas-gcu_12 NA other upstream 701350 14383581 ~ 14383815 (-)
trnas-gcu_15 NA other upstream 704384 14386615 ~ 14386696 (-)
trnal-cag_12 NA other upstream 909904 14592135 ~ 14592475 (-)

Expression


Co-expression Network