saysd1 (saysd1)


Basic Information

Item Value
gene id saysd1
gene name saysd1
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12068969 ~ 12075508 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923854.2
aCACTTCCGGGTGTTGCACTGATCGGTGTAACCATCGTAAACGTCCGTGTGCAACATATAAAACAGAACTATTTACTATAGCAAGTGAATTTGTGGACGTAGGTAATTTTTGGTAGAAAAACGCAGTTTTCTAACTAGTTTgcaaattgtttttaaatgtttgaacaTGGAACAGAAGTTAGCAGAGTTCAGAGCTCGAAGGAAAGCCGAGAAGCAACCAACGAAAAGCGAAAATCAAGCTGAAAGTTGCTGCTGTGAGACTCCCAAAGCTCCGACTGACTCGAGCACGTCCACTGAGTCCCACAGCAATGGACAAGAGGAAAACAGAGACTGGTTGCTGGACAGCGCTGTTGGCCGCTGGCTCGGCATGCAGCGTTTGGCTTTCACCAATCTGACCATGCTGAAGGTGTTACTGTGGCTTGTGTTGCTGGGTCTCTTCTCTGAGCTGGACTTTGGGCTGCCCTTCTTTCTCCTGTCTCTGTTTTACTGGCTTTATGAAGGTCTGCGGAGTCCAGGGGCGAGAAGGCCTGGTGAGCTGAGCGCCTATTCGGTGTTTAACCCCAACTGTCAGCCCATCCTGGGCACACTCACTGCAGAACAGCTGGAGGGAGAGATGGGTTACAGACCATTAAACAGCAGAGTGAATACATAACACACTACTGCCAAACTTCAGAATGAACACGGCTGAAGTTTGGATCACCCTGTAGAAAGATGTAATGTATTTTACgccaaacaccacacacatacactttacactttacacacacacacacacacacacacacacacactttacagacAAGGCCATGAGTAACATAGTAAATTAGGTTTTGAGTATTAGCTGATATCCTATACTAAGCTTTCTTGTGCCAAAGTTAAAGTCTAACTAAGTTAGGTTTGTATATACAAAACCTAACCTGACAAAACCTGGTCAGTGACTGTTATAATAGTAACCAGTTTattaggatttaaaaaaaaaaaaacatttcaaatgttttaaccctttcatgcatcaGTTATAACAACCTAAATCAGGATTTTCCCCTCATTGTTGTTATTCTTCTttaaaaggtaaaaataaaaactatggGACATGATACATTTGAATGTTCAATATCAATTAATATCCTACTGAAGAGAACACAATTATGTGAAAATTAAGAACATAAATAAGAGCTGGCATTGTCGATAATAGGCTGAtaccagcaaaataaataaataaataaaataaaaaataaaaaggttgaTCTGCTATCTGATACTGTAACAAATGGagactggaattggatttgaaaatttatttttggatcTGGAAATGTTTAGATGtaaagagacttgactgttttttcttttgttatggttgattacatttatactttattatatttacagtgcaaGTTATTTTGATGTGAAAGAATTTAACTgtaaagtgcttcagttaaactTGTCCAGAAAGCTTGTTTCTCATAACAGTTTTAGTCAATAGAGTTTTATTATGTTAAATGCCAGTCTTTTGCTCTCCCACAACACACAACCCACGGCCTGGTACCAGTCTGAAGCGTGTGGTCGGAAACCCCTGCACTAGCATACCAAACGTGACAAAGCTGCAAATACTCAGGTCTGAATAgttgttaatatttttgattttttaaaaatatatatgtagctgtttatgttttttattttcattatttaaaaaagtttagaaattaatttaaaatttagccAATTCAAAATaagactgtaaataaaaaaagaaataaaatatcagttCACATGTAATGTTGAAAGCACTTTTCACACTTCAGTGTGTCCAACAGACATGTTATTTTCTACTTATGAGTCATGGATATTGCGTAGAGACTCTATAGTCTGTACCATCCATGCACCTCATTCAGGTCAGTAATGGACCTTGAGTGTTTTTGAGAAGCTCATTAATGAAAGGCATCATCATGTTCTTGTATTCTTCACTGAGGGATTTGAAAAACAGCCTTTTCCAGGCTTTAGCTTCCACAGACAGACATTTTTAGTGGAGCTacagaataaaagtgaaaagtttaaaaagatgCAGAAGCAACAAATCTGTATGGCTCATTTGGAAAGGTACACATTTGAAGGCAGGTAATCCTGTTATATCGTCTTCATTAGATAATGAGACAACAACGACAGTACCATCTCGGTGCAgccattttatttgattatgtttACTATTGAAAGTGAAAACTAATGTTCTGTAATGTGTTTGACAGTATACACCCAACTGTTGACAACTCAATAAAGCTTAAAAGGATGA
>XR_003403339.2
gaCACTTCCGGGTGTTGCACTGATCGGTGTAACCATCGTAAACGTCCGTGTGCAACATATAAAACAGAACTATTTACTATAGCAAGTGAATTTGTGGACGTAGGTAATTTTTGGTAGAAAAACGCAGTTTTCTAACTAGTTTgcaaattgtttttaaatgtttgaacaTGGAACAGAAGTTAGCAGAGTTCAGAGCTCGAAGGAAAGCCGAGAAGCAACCAACGAAAAGCGAAAATCAAGCTGAAAGTTGCTGCTGTGAGACTCCCAAAGCTCCGACTGACTCGAGCACGTCCACTGAGTCCCACAGCAATGGACAAGAGGAAAACAGAGACTGGTTGCTGGACAGCGCTGTTGGCCGCTGGCTCGGCATGCAGCGTTTGGCTTTCACCAATCTGACCATGCTGAAGGTGTTACTGTGGCTTGTGTTGCTGGGTCTCTTCTCTGAGCTGGACTTTGGGCTGCCCTTCTTTCTCCTGTCTCTGTTTTACTGGCTTTATGAAGGTCTGCGGAGTCCAGGGGCGAGAAGGCCTGGTGAGCTGAGCGCCTATTCGGTGTTTAACCCCAACTGTCAGCCCATCCTGGGCACACTCACTGCAGAACAGCTGGAGGGAGAGATGGGTTACAGACCATTAAACAGCAGAGTGAATACATAACACACTACTGCCAAACTTCAGAATGAACACGGCTGAAGTTTGGATCACCCTGTAGAAAGATATTCCTGACCCAGAGAATCCTGCCAGCCACTGGAGGTATGTTTCTGCCGAGAGGAGGGTCTTCTCTGTTGGACTGGTAGTGCTACAGACATTAACAACAAAAAGACATTATTTAAGCCACACTTCTGCTTCT

Function

symbol description
saysd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SAYSD1 (SAYSVFN motif domain containing 1).

NR:

description
PREDICTED: SAYSvFN domain-containing protein 1-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923854.2 True 2293 mRNA 0.37 2 12072557 12075507
XR_003403339.2 False 846 misc_RNA 0.48 3 12068969 12075508

Neighbor

gene id symbol gene type direction distance location
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 10494 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 353630 11711429 ~ 11715339 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding downstream 371647 11692588 ~ 11697322 (-)
hsp90aa1.2 LOC108257811,LOC108411456,LOC101068853 coding downstream 376655 11686439 ~ 11692314 (-)
ppp2r5cb ppp2r5cb,LOC108257814,LOC108411434,LOC103025090,LOC107704375,LOC103369946 coding downstream 384789 11658684 ~ 11684180 (-)
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding upstream 259784 12335292 ~ 12345693 (-)
nek2 nek2,LOC107712406 coding upstream 277370 12352878 ~ 12361063 (-)
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding upstream 289771 12365279 ~ 12412879 (-)
ints7 ints7,LOC107659878,LOC107685756 coding upstream 338798 12414306 ~ 12433569 (-)
LOC113531824 NA coding upstream 465021 12540529 ~ 12549262 (-)
LOC117599805 NA non-coding downstream 22626 12039551 ~ 12046343 (-)
G293904 NA non-coding downstream 343644 11675246 ~ 11725325 (-)
G293831 LOC108257904 non-coding downstream 533101 11502952 ~ 11535868 (-)
G293722 NA non-coding downstream 751940 11315246 ~ 11317029 (-)
G293623 NA non-coding downstream 911110 11157612 ~ 11157859 (-)
G294300 NA non-coding upstream 26914 12102422 ~ 12102646 (-)
G294303 NA non-coding upstream 32434 12107942 ~ 12108160 (-)
G294320 NA non-coding upstream 59735 12135243 ~ 12135444 (-)
G294461 NA non-coding upstream 254905 12330413 ~ 12335201 (-)
G294482 NA non-coding upstream 310189 12385697 ~ 12386315 (-)
id2b LOC108257525 other downstream 1322210 10743639 ~ 10746759 (-)
G293480 NA other downstream 1387279 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 1530863 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 2200328 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 2225497 9843369 ~ 9843472 (-)
LOC113532050 LOC108257549 other upstream 19910 12095418 ~ 12219424 (-)
G294369 NA other upstream 165481 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 167071 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 236174 12311682 ~ 12317936 (-)
tmem151ba tmem151b other upstream 484482 12559990 ~ 12568837 (-)

Expression


Co-expression Network