hsp90aa1.2 (LOC108257811,LOC108411456,LOC101068853)


Basic Information

Item Value
gene id hsp90aa1.2
gene name LOC108257811,LOC108411456,LOC101068853
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11686439 ~ 11692314 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923402.2
TCCCGAGCAGGCCTGTTTCTCGAACCCTCTGTGGAAGCGCTATATATAAAGCCGGCGCGCGCTCTTCCTCcatcacagtacacacactcgTCCACAAAGGCAGGCTGAAAGCCGGGTAGCGTAGCGATAAACTCCTCAGTTAGGTCACATTAAAAGACTCTCAACAGTCAAGATGCCAGAGGCACATGATCAGCCAATGGAGGAGGAGGCAGAGACCTTTGCTTTCCAGGCAGAAATTGCCCAGCTGATGTCTCTgatcatcaacaccttctactCAAACAAAGAAATCTTCCTCAGGGAGCTAATCTCCAACTCCTCAGATGCATTGGACAAAATCCGATATGAAAGTCTGACCGACCCAAGTAAGCTAGACTCTGGAAAAGACCTGAAGATTGAAATCATTCCCAACAAAGAGGATCGCACACTGACCATCATCGACACTGGCATTGGCATGACCAAAGCCGATCTCATCAACAACTTGGGAACCATCGCCAAGTCTGGAACCAAGGCATTCATGGAGGCTCTGCAGGCTGGAGCCGACATCTCTATGATTGGTCAGTTTGGTGTGGGTTTCTACTCAGCCTACCTGGTAGCTGAGAAAGTCACAGTCATCACCAAACACAATGATGATGAGCAGTATGCATGGGAGTCATCTGCTGGAGGCTCATTCACAGTGAAGGTGGATAACTCTGAACCAATTAAGCGTGGCACAAAGGTGGTTCTGCATTTGAAGGAGGATCAGACAGAATACATCGAAGAGAGGCGTATTAAGGAGATTGTGAAGAAGCACTCACAGTTCATTGGTTATCCCATCACATTATATgTGGAGAAAGAACGTGACAAGGAAGTGAGTGATGATGAGgctgaggaagagaaagagaaggacaaagaggaggaaggagagaaagatgaagaTAAGCCAGAGATTGAGGATGTTGGCTCAGACGATGAGGACCATGACAAGAGcactgagaagaagaaaaagaagaaaatcaagGAGAAGTATATTGACCAGGAAGAGCTCAATAAAACCAAGCCTTTGTGGACCCGCAACCCTGATGACATCACTAATGAGGAGTATGGAGAGTTCTACAAAAGCCTGACAAATGACTGGGAGGACCACCTTGCTGTTAAACATTTCTCAGTGGAAGGGCAGCTGGAGTTCCGTGCCCTGCTCTTTGTACCCCGCAGAGCTCCTTTTGATCTTTTTgagaacaagaaaaagaagaacaacattaaGCTGTACGTGCGCCGTGTCTTCATCATGGACAACTGTGATGAACTCATTCCAGAGTATCTCAACTTCATCAAGGGTGTGGTGGATTCTGAAGACTTGCCCCTGAACATCTCCAGAGAGATGCTGCAACAGAGTAAGATCCTCAAAGTCATCAGAAAGAACCTGGTCAAGAAGTGCCTTGAGCTCTTCACTGAACTTGCTGAGGACAAGGACAACTACAAGAAGTATTATGAACAGTTCTCCAAGAATATCAAGCTTGGTATCCATGAGGACTCTCAGAATAGGAAAAAACTCTCTGAGCTGCTGCGCTACTACACCTCTGCCTCTGGGGATGAGATGGTGTCCCTTAAAGATTACGTCACCCGCATGAAGGACACCCAGAAACACATCTACTACATTACTGGTGAGACCAAAGAACAGGTGGCCAACTCTGCCTTTGTGGAACGGCTGCGCAAAGCTGGCCTGGAGGTGATCTACATGATTGAGCCCATTGATGAGTACTGTGTTCAGCAGCTAAAGGAATTTGAGGGCAAGAACCTGGTGTCAGTGACCAAGGAGGGTCTGGAGCTGCCCGAGGAtgaggaggaaaagaagaaacaggaggagaagaaggcACAGTTTGAGAACCTGTGCAAGATCATGAAGGACATTCTTGAAAAGAAGGTTGAGAAGGTTACTGTCTCCAACCGCCTGGTTGCCTCCCCCTGCTGCATTGTGACCAGTACATACGGCTGGACTGCCAACATGGAGAGGATCATGAAGGCCCAGGCTCTGAGGGACAACTCTACCATGGGCTACATGGCGGCCAAGAAGCACCTAGAGATCAACCCCGATCACCCTATTATTGAAACCCTTCGGCAAAAGGCAGAGGCTGACAAGAATGACAAGTCTGTAAAGGATCTGGTCATCTTGCTATTCGAGACTGCACTGCTCTCGTCGGGCTTCACCCTTGACGACCCTCAGACACACTCGAACCGCATCTACAGGATGATCAAGCTGGGCTTGGGCATTGATGAGGATGACCTGTCGACTGAAGAGCCCAGCTCGGCTCCCATTGAGGACATGCCCCCCTTGGAAGGGGATGACGACACATCCCGCATGGAGGaggttgattaaaaaaaaaactgcttagTTTGTTAGTGTACAGGTTTAACTGGGTGGGCTTGAGATGTGCCTGGGTGGCTGCAGTTCTGAGCACCACCAGGATTACAACAGCATGAGCTCCCATGTGTAAAAAGATGCATGTATTTATCAGTAAGACTTTATctaaacatgtaaaaataaaggcAATGTTTTCCAGATACTGTTCTGTCACTGTTctcaatttaaaaattttagaaCTGTGCTAGAACTAACTTGTGTCTGGAAACCTAGATCAGTGTATAGAGAGCTAGTGATGGTTACATGCAACACTCTAGTACTTGGAACACCAAGTTATGTTGGAGACTGTTAATTAGTTGTGTAGCTGTACCTGGCTAGGTGCCTGGGTGCTAATTGAGTCCACTTGGTATTGATTCTGACTTTGGTTATTGTTAACGTTCTTGCGCTTTCACAACTGTTCTCAAATCAGGATTAGTGATTAAGTGCACCCGTTCCCTTTTTTCCA

Function

NR:

description
PREDICTED: heat shock protein HSP 90-alpha

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0048769 sarcomerogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0042470 melanosome cellular_component
GO:0030018 Z disc cellular_component
GO:0005524 ATP binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923402.2 True 2843 mRNA 0.47 11 11686439 11692314

Neighbor

gene id symbol gene type direction distance location
ppp2r5cb ppp2r5cb,LOC108257814,LOC108411434,LOC103025090,LOC107704375,LOC103369946 coding downstream 2259 11658684 ~ 11684180 (-)
slc25a29 myh6,LOC103031694,LOC102786665,LOC108251423,LOC780532 coding downstream 87376 11584260 ~ 11599063 (-)
hpcal1 hpcal1,LOC108258003,LOC107696114,LOC105909572,LOC107549126,LOC107726415,LOC107601527,LOC108411356,LOC102224670,LOC101077504 coding downstream 209919 11467717 ~ 11476520 (-)
fam166c c25h2orf70 coding downstream 295550 11388826 ~ 11390889 (-)
fndc1 fndc1,LOC106518635 coding downstream 302115 11347402 ~ 11384324 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding upstream 274 11692588 ~ 11697322 (-)
mgat2 mgat2 coding upstream 19115 11711429 ~ 11715339 (-)
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding upstream 354879 12047193 ~ 12058475 (-)
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding upstream 642978 12335292 ~ 12345693 (-)
nek2 nek2,LOC107712406 coding upstream 660564 12352878 ~ 12361063 (-)
G293831 LOC108257904 non-coding downstream 150571 11502952 ~ 11535868 (-)
G293722 NA non-coding downstream 369410 11315246 ~ 11317029 (-)
G293623 NA non-coding downstream 528580 11157612 ~ 11157859 (-)
G293621 NA non-coding downstream 540135 11144949 ~ 11146304 (-)
LOC113532433 NA non-coding downstream 663498 11022721 ~ 11022941 (-)
LOC117599805 NA non-coding upstream 347237 12039551 ~ 12046343 (-)
G294300 NA non-coding upstream 410108 12102422 ~ 12102646 (-)
G294303 NA non-coding upstream 415628 12107942 ~ 12108160 (-)
G294320 NA non-coding upstream 442929 12135243 ~ 12135444 (-)
G294461 NA non-coding upstream 638099 12330413 ~ 12335201 (-)
id2b LOC108257525 other downstream 939680 10743639 ~ 10746759 (-)
G293480 NA other downstream 1004749 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 1148333 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 1817798 9750991 ~ 9868641 (-)
saysd1 saysd1 other upstream 376655 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 403104 12095418 ~ 12219424 (-)
G294369 NA other upstream 548675 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 550265 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 619368 12311682 ~ 12317936 (-)

Expression


Co-expression Network