id2b (LOC108257525)


Basic Information

Item Value
gene id id2b
gene name LOC108257525
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10743639 ~ 10746759 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922657.2
CGGCCCGTTCACTATATAAACTAAAACCCAGCAGGCTCTGGAGTAGATCTGCGAGACAGCATCTGACGGTTGTGTAGctgaacaggaaacaggaagcaggTGACTATGAAGGCGATCAGTCCAGTGCTGCCGATGCGAAGGACTCACGTGAACTCGCACGCGCAGGATCTCGGGATCTGGAGAAGTAAGAGCGCGTGGGATGAGCCGCTCGGTGTGCTGTGCGACATGAACGACTGCTACAGCCGCCTGAAGGAGCTGGTGCCCAGCCTGCCGCAGGACCGGAGCGTCAGTAAGATGGAGATCCTGCAGCATGTCATCGATTACATCCTGGACCTTCAGATCGCGCTGGACTCCAGCACGGCTAATGCGAGTCCACAGCCGCAGCGGCGTCCTGCTCAAGCAGGCGTTTCCTCCAGCACTGAAGCCGACATCAGCTCGTGTCAgaTAAGCCACTTTGCAAGAGAAACGAACACAGATGAGCAGATAACGATCTGAAGCGGTGTTTCTCTGGAGCAAAAACAGGACCctcttccctctttttttttttttttttgttgttatccTTCCGTGTACTTTCGCCTGGACTTCGTCTTGACTGACACGGATTTCCCTCAAACGGAGATAAACCATTCTGTATGtctgatttatatttatctgCAGGCCATACATGACCTTTCTTCCAAAGGAAGACCTCATTACAGGACTGAGAGAAccagttgtttaaaaaaaagaaaggataatGAACAGAAGGGGGGAACGCCTTTTGTGAAGGTGTCAAACTGCAGGCTCGGTGTGATCAGAGAGCTCAGATGATCAGCAGTGCTGAGGGATTAACAGATCATATTTGGCTGTAACACTTACTATAACATGCAAAGTGTCACCTTCATTTCAGACTTTAACCTGTTCTTTTAACAGAATTTATGCAGCACCATTCTCTATTTAGACTtttagtgatattttttttttctaaagccaTTCCTGAGCCAGTAGAGGGCACTGCAGCTGATCTACTACTCTACTCCATTCAGACATTTAGCCTTAGGcctacattattttttaaaaataatataaaccacCATATTACGGTTTTTAGAAGCAAGCTGAgaagttttgtgttttatcatgacatttaaataatattctatTAATATAGCCTTTCAGTACCATTACCATTATTGTACATTTAGCCATTTATCCCCTTCGGGGTGAGGGTTAGTTCAACTAATCATAAGTATTAAGAACATGTTACCTGGTACAGGAATAAATATTAGAACTTTCAAAATCCTCCCCAGCACTGATGATCCATCCCTACATGGGCATGAgatgaactgtgtgtgtatgtgaatgaatGTTAAAGCAGGGTGAACAGTAAAGGTTCACAGCGTGCCATTCCTGTAAAGCGCatcaatgtttttctttaattctgCTGGAATGTGATGTTAGTAATGCCAAATGATTTtctataaattatgtaaattgcacttttatatgaaataaattaattatgatGTAGACTA
>XR_004580078.1
CAGCGTGGACCAATCCGCTTCATTCTTTATCCCGCATCATAAGCCCGGCCCGTTCACTATATAAACTAAAACCCAGCAGGCTCTGGAGTAGATCTGCGAGACAGCATCTGACGGTTGTGTAGctgaacaggaaacaggaagcaggTGACTATGAAGGCGATCAGTCCAGTGCTGCCGATGCGAAGGACTCACGTGAACTCGCACGCGCAGGATCTCGGGATCTGGAGAAGTAAGAGCGCGTGGGATGAGCCGCTCGGTGTGCTGTGCGACATGAACGACTGCTACAGCCGCCTGAAGGAGCTGGTGCCCAGCCTGCCGCAGGACCGGAGCGTCAGTAAGATGGAGATCCTGCAGCATGTCATCGATTACATCCTGGACCTTCAGATCGCGCTGGACTCCAGCACGGCTAATGCGAGTCCACAGCCGCAGCGGCGTCCTGCTCAAGCAGGCGTTTCCTCCAGCACTGAAGCCGACATCAGCTCGTGTCAgATTACTACATAAATCAATTATACAACAACTCAGGATCCAACTCATAACACACCAGAAGAAATTAGCAAATGAAATTTGCACTTGAGAGAGGTGTAAATCTCTCCTGTTTGGACAACAGGGTGTGACGATATCCTGAAGCATCCACCATATCAACATCATTGAATATCATGATATAGATGGTTATCTGCACGAGCCTGATTGACATAGAAATTTATTCTGGCTCATGCAAAATcagaaaacaacataaaaaatggAACAAGTTACAGAAGATATAAAGGAGCCTGTAAACGTGTCCATCTGTAAACTCGTGTGGAAGTGACAGCAGGAGAAGGCAAGTCTAAGAACCAGCATGAAGGATGTGTGCATGTTCATGTTCAAGGCAGAGTGTATTGCAGTTTGTCATAGTAGCTAGAACTGAAGAGAAAGCACATGCATGTGTGGAAAATTGCTCTAAGGACAATTTATTTCCatgtgttgtgggtttttttccccaccagaTAAGCCACTTTGCAAGAGAAACGAACACAGATGAGCAGATAACGATCTGAAGCGGTGTTTCTCTGGAGCAAAAACAGGACCctcttccctctttttttttttttttttgttgttatccTTCCGTGTACTTTCGCCTGGACTTCGTCTTGACTGACACGGATTTCCCTCAAACGGAGATAAACCATTCTGTATGtctgatttatatttatctgCAGGCCATACATGACCTTTCTTCCAAAGGAAGACCTCATTACAGGACTGAGAGAAccagttgtttaaaaaaaagaaaggataatGAACAGAAGGGGGGAACGCCTTTTGTGAAGGTGTCAAACTGCAGGCTCGGTGTGATCAGAGAGCTCAGATGATCAGCAGTGCTGAGGGATTAACAGATCATATTTGGCTGTAACACTTACTATAACATGCAAAGTGTCACCTTCATTTCAGACTTTAACCTGTTCTTTTAACAGAATTTATGCAGCACCATTCTCTATTTAGACTtttagtgatattttttttttctaaagccaTTCCTGAGCCAGTAGAGGGCACTGCAGCTGATCTACTACTCTACTCCATTCAGACATTTAGCCTTAGGcctacattattttttaaaaataatataaaccacCATATTACGGTTTTTAGAAGCAAGCTGAgaagttttgtgttttatcatgacatttaaataatattctatTAATATAGCCTTTCAGTACCATTACCATTATTGTACATTTAGCCATTTATCCCCTTCGGGGTGAGGGTTAGTTCAACTAATCATAAGTATTAAGAACATGTTACCTGGTACAGGAATAAATATTAGAACTTTCAAAATCCTCCCCAGCACTGATGATCCATCCCTACATGGGCATGAgatgaactgtgtgtgtatgtgaatgaatGTTAAAGCAGGGTGAACAGTAAAGGTTCACAGCGTGCCATTCCTGTAAAGCGCatcaatgtttttctttaattctgCTGGAATGTGATGTTAGTAATGCCAAATGATTTtctataaattatgtaaattgcacttttatatgaaataaattaattatgatGTAGACTA

Function

NR:

description
PREDICTED: DNA-binding protein inhibitor ID-2-like

GO:

id name namespace
GO:0050794 regulation of cellular process biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922657.2 False 1517 mRNA 0.43 3 10743639 10746714
XR_004580078.1 True 2059 misc_RNA 0.42 3 10743639 10746759

Neighbor

gene id symbol gene type direction distance location
si:ch211-195d17.2 LOC108257787 coding downstream 62423 10673520 ~ 10681216 (-)
cpsf3 cpsf3,LOC107756584,LOC107668237,LOC107693240,LOC107549104,LOC107601862 coding downstream 95885 10638966 ~ 10647754 (-)
taf1b taf1b coding downstream 160088 10572786 ~ 10583551 (-)
klf11a klf11 coding downstream 183598 10555695 ~ 10560041 (-)
LOC113532436 NA coding downstream 193613 10549887 ~ 10550026 (-)
rnf144ab rnf144ab,LOC108411012 coding upstream 31926 10778685 ~ 10792590 (-)
sox11b LOC108258189 coding upstream 125193 10871952 ~ 10874367 (-)
allc allc coding upstream 259573 11006332 ~ 11013132 (-)
rps7 rps7,LOC107668222 coding upstream 271643 11018402 ~ 11024886 (-)
hebp2 LOC108257783,LOC108411258 coding upstream 531695 11278454 ~ 11284551 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding downstream 132144 10609935 ~ 10611495 (-)
G293374 NA non-coding downstream 205000 10538426 ~ 10538639 (-)
LOC117599772 NA non-coding downstream 369083 10363005 ~ 10374556 (-)
G293316 NA non-coding downstream 384171 10359223 ~ 10359468 (-)
G293315 NA non-coding downstream 384538 10358497 ~ 10359101 (-)
G293513 NA non-coding upstream 127764 10874523 ~ 10874747 (-)
G293514 NA non-coding upstream 128689 10875448 ~ 10875669 (-)
G293515 NA non-coding upstream 129374 10876133 ~ 10876356 (-)
LOC113532439 NA non-coding upstream 272428 11019187 ~ 11019407 (-)
G293531 NA non-coding upstream 273820 11020579 ~ 11022955 (-)
G293480 NA other downstream 61949 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 205533 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 874998 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 900167 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 1227462 9508581 ~ 9516177 (-)
saysd1 saysd1 other upstream 1322210 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1348659 12095418 ~ 12219424 (-)
G294369 NA other upstream 1494230 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 1495820 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 1564923 12311682 ~ 12317936 (-)

Expression


Co-expression Network