taf1b (taf1b)


Basic Information

Item Value
gene id taf1b
gene name taf1b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10572786 ~ 10583551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923821.2
TGAAATGTCGTTATACTGTAGCGTGAGGACGCCATTTTGGATTTTCCTCCCTGCGTGTTGTGATGAACTTGGAAATGTGTTTGATAAATGAGTGGCTTTGTTGAAGCTTTATGGAAGTGCTGTGAAGATGGACGAAGAGATAACAgaCGGTTACAGTGAAGCCTGTGGACAGTGTGGCTCAGTGTGTTGGGCTGTTTCTGATGGAGGGCAGTTCTTCTGTAAAAACTGCCATAATGTGATTGAGAGAACGAGAGAAGTTGAGGATATGAACACGTTGCCCTTCAACAGCAGGATCTCCTCTTTAGCATCAGGCAAACGGAAGCGGAATGGAAGAGaAGGTGCAAGAGACTGGATGGTATGCGAAGGCTTTCAGGTGATTCTAAAACTTCAGGCCGAAGCTTTGGTTGATCTGGGTGTCTGCCCTCAGTTTAAGGCTGATGTGTTATGGATTTTCTGGAAGCGATACATGCAGAAGACTGGACAAGCATACACAAGAAGGCCAGTGAACAGTATCAGAAATTTAATGGACTTGACCAGCAACAGTGAGGCCGAGTCATCTGTCTGTTTCAATGATGCGTCATGTCACACTGAGACTGCTTCGATGAAGGGAACCAGCAAAGTCTCTGGATACTCCAGTGATGGGAGATCTTCAGTGTGTTCGGGCTCCATGGATGCTGAATATTACTTTGGacggaaagaaaggaagaaccTGATGAGCATGCCCCGAACACTAGCATTCTGCCACCTGGCTTTGCTTTGGGTCCGGGAGGCCATCACCCTGTCGGACTTGCTCAGGTTGGTGTCTAAGGGCCACATCCCTTATGTTAATGCTCATACTCTTTTTCCTGAAGAGATGAGATTCTTTGGCAAGGATGCCATGATCTTTAGAGTTGAGTCTATCCCCTCTTACAATAAGGTACACAGAGAGGCAGTGGAACTGGCGGCACTGATAGAGCTGCCCACTTTCCCTCCTGTGTCTCAGGACTGCCTCCTTCATCCAGCTCTGCTCAGTCTACGCTATTTGATGGATGCTAACCTTCCTGacAAACTTCATGCATTGGTTTGTAAAGTAATACAGAAAACAGCTATGGAGAAAGACTCCtttctgacctttgaccctacTGAGAAAAAGCCTACACTTCTGTGCTATGATCTTCAGGCTGCAGCGCTCATTGTCGTGACCATGAAGCTTCTGTTCAGGCTGGACGATAAGGTGGAGTGGAAGTTGGCCAGGAAAGCAgatgaaaaaggaaatgaaatggaccatggcaagaaaaagaaaaagaccaaGAAAGGAGGAAAGATGTTTAGTTTGAGAACATGGTTTATGATTGTACAGCCTACACTGGAACGAgccaggaagaaagaaaagcaggCTGAGGCCATGCAACAGTGGAAATCTAAGAAGCCCATCATTCCATCTTTGAAACATAAAACCGTCGTACTAAAACGGAGACgtgtggTTGAGCAGCTGCAAAGCAGTTTCCAAGCTCTTTCTGGCTCAGCTCCAGAGCAGCAGGTTTCGTCCCCATCCACCTTCCTCTTCCTTTGGGGAGACGAGGATGGAGCTGATGGACCCAGTCTCCGCCACAAGTGCCTGGACTATCTGATGATTAAAAGGCAAAAAATCTGGCACCTTGACAACCGTAAATATTGGCACACTGACTTGAGGAAGTGCCATCCAGGtgtgtgtggagaccATTTCAGGGAGCTGGAGCCTACTTTGCCCAGGATGTATGTGTGGTTGCTGGGACTCTTCTCTTTCATGCTGGGAGTTGAAGACGCGCAGTTGCACAGTGCAGTCGTCCAGGTGGAGCAACGCCTACTGACAAAGCTGGGTCACAAATAAAAACCAGAAACCCTCAGTGAATGAAGATGGACACTGTGTGACTGAAGGATTGCGGCGTTTTCTTCTTGTGTGTGAACAGACACTGCCTGCTGTTACTCATTAGAACAGAAGTGTGTGATGCGACCTTTGTAAGGTTTACAGTCTGACACagttgtctgtgtttttatacTGTACAGTTTCATAaagccatttcttttttttttctttcaataagTGGAAGAGTGGTTGAAATGGAATATTTGTGTATTTCCACACTGATTTCTAAAATCTAAAGcacattttaaattgtatatgttttttttttcttttggtgtaTAGGAGCGTGGAAGATACACTGACCATTATAAATGGATCCTGCTTTCTTAAAGTTTATGTGAATGATTATAAACCGTTTATTTCACAGTCAAGTACAAACTTCACCTCTCAGGGTCCTGGAATGATACAGTTCAATCTCTGTTAAGGGGTATAGCGCTTACCTCTAAAATGAGCCAGTGTACAAAAGTTACTTTTAAAAGGGCAGTTTGTATTATTTAGAGCTCTCTGCTGCCTGCAAGGTAAATTATAATTGCAACAAAAACTCTTTCCCTTCCCTCAAGCTGATGCTACCTTTGCTGTTGAAACTGTTTGCTGCAGAAGAGGAGATAtagagagaaaactgaaaaatataaatggaaacaaaatatgaaataaagaaactagTGCAAAAGCAAA

Function

symbol description
taf1b Predicted to enable RNA polymerase I core promoter sequence-specific DNA binding activity. Predicted to be involved in RNA polymerase I preinitiation complex assembly and nucleolar large rRNA transcription by RNA polymerase I. Predicted to act upstream of or within transcription by RNA polymerase I. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I core factor complex and RNA polymerase transcription factor SL1 complex. Orthologous to human TAF1B (TATA-box binding protein associated factor, RNA polymerase I subunit B).

NR:

description
TATA box-binding protein-associated factor RNA polymerase I subunit B

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006360 transcription by RNA polymerase I biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923821.2 True 2560 mRNA 0.44 15 10572786 10583551

Neighbor

gene id symbol gene type direction distance location
klf11a klf11 coding downstream 12745 10555695 ~ 10560041 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding downstream 20788 10547351 ~ 10551998 (-)
LOC113532436 NA coding downstream 22760 10549887 ~ 10550026 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 30731 10538770 ~ 10542055 (-)
grem1a grem1 coding downstream 42333 10527829 ~ 10530453 (-)
cpsf3 cpsf3,LOC107756584,LOC107668237,LOC107693240,LOC107549104,LOC107601862 coding upstream 55415 10638966 ~ 10647754 (-)
si:ch211-195d17.2 LOC108257787 coding upstream 89969 10673520 ~ 10681216 (-)
rnf144ab rnf144ab,LOC108411012 coding upstream 195134 10778685 ~ 10792590 (-)
sox11b LOC108258189 coding upstream 288401 10871952 ~ 10874367 (-)
allc allc coding upstream 422781 11006332 ~ 11013132 (-)
G293374 NA non-coding downstream 34147 10538426 ~ 10538639 (-)
LOC117599772 NA non-coding downstream 198230 10363005 ~ 10374556 (-)
G293316 NA non-coding downstream 213318 10359223 ~ 10359468 (-)
G293315 NA non-coding downstream 213685 10358497 ~ 10359101 (-)
G293296 NA non-coding downstream 256917 10315658 ~ 10315869 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding upstream 26384 10609935 ~ 10611495 (-)
G293513 NA non-coding upstream 290972 10874523 ~ 10874747 (-)
G293514 NA non-coding upstream 291897 10875448 ~ 10875669 (-)
G293515 NA non-coding upstream 292582 10876133 ~ 10876356 (-)
LOC113532439 NA non-coding upstream 435636 11019187 ~ 11019407 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 34680 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 704145 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 729314 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 1056609 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 1081516 9488218 ~ 9491270 (-)
G293480 NA other upstream 97759 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 160088 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1485418 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1511867 12095418 ~ 12219424 (-)
G294369 NA other upstream 1657438 12240989 ~ 12241901 (-)

Expression


Co-expression Network