G293296


Basic Information

Item Value
gene id G293296
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10315658 ~ 10315869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347497
gtcaaaggtcaatgAGCCAGTCACCAGCTAAATGCACTAAACACTATCCCCTGTAGGAGACTGTTTAATGTACTGTACTAGAGTATTTGGTTCAGATTTAGGGTGAAATGGGGTGAAATGATTCAAATGCATAGTTGCTATTCTGTGTTTTACTGGACACAGAATAGCAACACAGTCCAGAACAGCAACACAATCCAGTAAGAGATACAGAC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106613328 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347497 True 212 lncRNA 0.41 1 10315658 10315869

Neighbor

gene id symbol gene type direction distance location
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 47958 10257496 ~ 10267700 (-)
LOC113532350 LOC108257934,LOC108257933 coding downstream 87847 10225451 ~ 10227811 (-)
LOC113532348 LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846 coding downstream 96074 10217742 ~ 10219584 (-)
LOC113532347 LOC108257934,LOC108257933,LOC106674865,LOC101066992,LOC103389000 coding downstream 108044 10206021 ~ 10207614 (-)
stx11b.1 LOC108257894,LOC103032305 coding downstream 180332 10132583 ~ 10135326 (-)
chrm5b chrm5 coding upstream 65050 10380919 ~ 10395762 (-)
ryr3 ryr3 coding upstream 96176 10412045 ~ 10495693 (-)
grem1a grem1 coding upstream 211960 10527829 ~ 10530453 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 222901 10538770 ~ 10542055 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding upstream 231482 10547351 ~ 10551998 (-)
G293276 NA non-coding downstream 69156 10246082 ~ 10246502 (-)
LOC117599775 NA non-coding downstream 119377 10187821 ~ 10196281 (-)
LOC117599728 NA non-coding downstream 134969 10179966 ~ 10180689 (-)
G293082 NA non-coding downstream 287655 10027305 ~ 10028003 (-)
G293057 gmds non-coding downstream 289809 9977852 ~ 10025849 (-)
G293315 NA non-coding upstream 42628 10358497 ~ 10359101 (-)
G293316 NA non-coding upstream 43354 10359223 ~ 10359468 (-)
LOC117599772 NA non-coding upstream 47136 10363005 ~ 10374556 (-)
G293374 NA non-coding upstream 222557 10538426 ~ 10538639 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding upstream 294066 10609935 ~ 10611495 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 447017 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 472186 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 799481 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 824388 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1717491 8584193 ~ 8598167 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 216125 10531994 ~ 10538106 (-)
G293480 NA other upstream 365441 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 427770 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1753100 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1779549 12095418 ~ 12219424 (-)

Expression


Co-expression Network