LOC113532350 (LOC108257934,LOC108257933)


Basic Information

Item Value
gene id LOC113532350
gene name LOC108257934,LOC108257933
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10225451 ~ 10227811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923699.2
CCAACTGTGGAAATAGTCCATATGAGACTGCTGTTTCAAATAAATAGGAGTGTGAAGTGAGATCTGCATCAAAGGTGATCAACAGCCATCATGAAATCTCTGGTCCTGCTTTTGTTTGTGGGAGCTTGTGCTCTGGAGGATAACAAGATTGTTGGAGGGTATGAGTGCACACCCTACTCCCAGCCCTGGCAAGTGTCTCTGAATGCTGGCTATCACTTCTGTGGTGGTTCTCTGATCAATCAGAACTGGGTTGTGTCTGCTGCTCACTGCTACAAATCTCGTTTGGAGGTTCGTTTGGGAGAGCACAACATCCAGATTAATGAGGGTACTGAGCAGTTCATCTCCTCGTCTCGTGTCATCCGCCATCCCAACTATGACTCCTGGACCTTAGACAGCAACATCATGCTCATCAAGCTAAGTCAACCTGCTACTCTGAACAACTATGTGCAGCCTGTTGCACTGCCTAGGAGCTTCCCCCCTGCAGGAACCTGGTGCACAGTCTCTGGTTGGGGAAACACCATGAGCTCCACTGCCGATCGCAATAAGCTGCAGTGTCTTGAGGTCCTTATTCTCTCTGACAGGGATTGTAATTGCTACCTTGGTATCATCACTAATACCATGTTCTGTGCTGGTTTCCCGGAAGGAGGCAGGGACTGCCGGGGTGACTCTGGTGGCTCTCTGGTGTGCAATGGTGAGCTGCAGGGTATTGTGTCTTGGGACAGCAGCTGTGCTGAGAATTGCCTTGGTTTCTATGTCAAGGTTTATGTTTTCACCAGCTGGATTTCTCAAACAATGGCCAGCAACTAAATCTGCTCCAGCCCCCTTTATATAATGCAACAACATATTGTGAATTCCAACACCAACATATTCATAAAACTTCTTGAAGGAATAGGAACAATCCTGGTTGACTTTATATCTAGCTTGATTctcttatataaatatttattaccaTACACCTGTACTTATGGGTACCTGGAGGACTAGTAGTTGGGCCTTAGCACTCTCACCGCTGTGGTCCGGGTTCAACTCCCGGGCAGGGAACCACACGACAGTGTACTCCTAGTCCCcatcccaagcccagataaaattggagAGGGTTGTGTCAAATATATAAGcaaacatgcggaccaatgatccgctgttgCAACCCTTAATGGGAGCAGCCAGAAGAATAACAACAACTATAATACTGTACtgcaaggaaaactccaccctgaaacaaattaaatatgtttatataggAAATATTTGTGAGGTACTAAGTGACTGTGGTGCCACTTTGTTGGCTGGAGTTGTATATTCATTACTGTCATGAAAAGTTAGCAGTTGTCTGCCACAGGGTGACACTGGGCCTCATCTATCAAtgtagtaaagttgtgtgtaaatatttgcataagccaaaccgAAAACCTTCGagtggatttacaaaagttttggaaacagtgattttctttgtacttgcGTAAGTATGTTGAAGACAATACCCTGTAAATTACTGGGCATgtgcacagcacagctgatttgcatttggtgaacCGACAAAACTTCATTAAAGGCAAAGTTCATTGCGCTGAAATAACAAGTAGATGGCAAAAAAGACTTTCTTAGAGGTAGAGAGTTATTTAGACTTGCATCTAtgggaataaaatataaagtcatgggaaaaagaaagta

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923699.2 True 1674 mRNA 0.44 6 10225451 10227811

Neighbor

gene id symbol gene type direction distance location
LOC113532348 LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846 coding downstream 5867 10217742 ~ 10219584 (-)
LOC113532347 LOC108257934,LOC108257933,LOC106674865,LOC101066992,LOC103389000 coding downstream 17837 10206021 ~ 10207614 (-)
stx11b.1 LOC108257894,LOC103032305 coding downstream 90125 10132583 ~ 10135326 (-)
irf4b irf4,LOC108257893 coding downstream 96367 10124288 ~ 10129084 (-)
foxq1b LOC108257547 coding downstream 168710 10055133 ~ 10056741 (-)
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 29685 10257496 ~ 10267700 (-)
chrm5b chrm5 coding upstream 153108 10380919 ~ 10395762 (-)
ryr3 ryr3 coding upstream 184234 10412045 ~ 10495693 (-)
grem1a grem1 coding upstream 300018 10527829 ~ 10530453 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 310959 10538770 ~ 10542055 (-)
LOC117599775 NA non-coding downstream 29170 10187821 ~ 10196281 (-)
LOC117599728 NA non-coding downstream 44762 10179966 ~ 10180689 (-)
G293082 NA non-coding downstream 197448 10027305 ~ 10028003 (-)
G293057 gmds non-coding downstream 199602 9977852 ~ 10025849 (-)
LOC117599790 NA non-coding downstream 293680 9930895 ~ 9931771 (-)
G293276 NA non-coding upstream 18271 10246082 ~ 10246502 (-)
G293296 NA non-coding upstream 87847 10315658 ~ 10315869 (-)
G293315 NA non-coding upstream 130686 10358497 ~ 10359101 (-)
G293316 NA non-coding upstream 131412 10359223 ~ 10359468 (-)
LOC117599772 NA non-coding upstream 135194 10363005 ~ 10374556 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 356810 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 381979 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 709274 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 734181 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1627284 8584193 ~ 8598167 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 304183 10531994 ~ 10538106 (-)
G293480 NA other upstream 453499 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 515828 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1841158 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1867607 12095418 ~ 12219424 (-)

Expression


Co-expression Network