irf4b (irf4,LOC108257893)


Basic Information

Item Value
gene id irf4b
gene name irf4,LOC108257893
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10124288 ~ 10129084 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944661.2
GCGAGTTTCCCCGCAGGGTCGCTTACGGGACGTCCGCTTCTGACACACGCACGTGCGCGCGCTCTGCAAACTCCCCGCCCCTTTCGAACTCGCACCATTTAAGAAAATTCGCGGTGGAGAGTCAGACTGCATCCTTCTGATACCCACCAAAACCCCTGAACTCTGCAGCGAGATGTGCTCGGATGGAGAACGCGCGGCGCTGGGCAGCTCGGGAAACGGCAAGCTGCGCCAGTGGCTCATCGAGCAGGTGGACACCGGGAAATACCCGGGACTCGTGTGGGAGAACGAGGAGAAGAGTGTGTTCCGGATCCCGTGGAAGCACGCGGGGAAACAGGACTACAACCGGGACGAGGACGCAGCACTCTTCAAGGCTTGGGCGCTGTTTAAAGGCAAATACCGGGAGGGCATCGACAAACCAGACCCCCCCACGTGGAAAACGCGTCTCCGTTGCGCGCTTAACAAGAGCAACGACTTCGAGGAGCTGCTGGATCGCAGTCAGCTCGACATTTCGGACCCTTATAAAGTTTACCGGATTGTTCCCGAGGGCGCCAAAAAAGCCTCCAGATCTCTAGAGGATACGACATCAAACCCAAGCCCTCCGAGTTATCCACTACATGCTTCCTATGCGCCCCTGCAGAGTCAGGTCTGTGGCTTCATTTCTCCAGCAGAGAGGAGTTGGAGGGATTACCTCTCAGAAAAGCCCCCTATGGCTGACATCCCTTACAACCAAAATCCATACACCTCTCGATGGGATACAGGATACCAGTTCAGTGGCTCCTTCTATAGCTGCAGTGCCTCAGAGCCTCTGCCGTCTGCTTTTACACTAGATGCCAGCATGAAGTCAGCAGAGGCCATGGCCCTCTCAGATTACCGGCTCCATGTGGCAGTATATTTCCGGGATGCCCTTGTGCGGGAGGTGACTGTGAGCAGTCTAGAAGGTTGTGTTCTGGGTGTGAGCAAAGATGGTTTGCCATATGGAGTCTCTCAAGGTCCGGAGCTTGTGGAGCTTCCACAGATTGAACACAGCTCTCTGGAACATGGGGTTCTGTTGTGGATGGCACCAGATGGGCTGTATGCTCGCCGCTGCTGCCCCTGCAGGGTGTACTGGGAGGGAGGGCACTCTTCGCCCAACAACAAACCCAACAAACTACAGAGGGATCAGACGTGCAAACTGCTGGACACTCAGCAATTCATCACAGAGTTACAGAGCTATGCTCGGCACATACGTCCTCCACCCATGTCCCAGGTGCTCCTGTTCTTTGACGAAGACAGCACAGAGCCCCAGAGACCAGGAAGGACCCTCACTGTTCAGGTGGAGCCTCTCTTTGCTCGACAGCTTCTCTATTTTACCCACTCAAGCAGCATGAACTATATCCGCAGCCACAGCCTTTCACCTCTGAGCCCAGAGCACACAATTCCCCCAAGTCAGGACTTCCACAGAGTCATCAGCCATCACCACAGCAACAGTCTGTAAAATTTAGCTTCACCTGGGACAGCTAGCATCGGGCAAGTCGAACTGAAGCACGGACAAAGGTGGACACAACAAATGCACTGTCATGGCTCATAAGTGATGATGACAGAGTATCAACATTATCAACTATTTTCTCCGAACCCACTCAAGCAGTTGGACTTGTGTTCGcagaatggacaaaaaaaattgcactttgCATATGTCTGATGAGCCCTTTGCATTCTTTTTCTTAGCAATTTATAGTTCTTTAACATCATCTCAGGGAACTGTAGTGCAACAGTATTAAAATTGTT

Function

symbol description
irf4 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of cytokine production and positive regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm. Implicated in acute lymphoblastic leukemia; anaplastic large cell lymphoma; chronic lymphocytic leukemia; multiple myeloma; and peripheral T-cell lymphoma. Biomarker of dilated cardiomyopathy and hematologic cancer (multiple).

NR:

description
PREDICTED: interferon regulatory factor 4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944661.2 True 1764 mRNA 0.53 9 10124288 10129084

Neighbor

gene id symbol gene type direction distance location
foxq1b LOC108257547 coding downstream 67547 10055133 ~ 10056741 (-)
foxf2b LOC108257536 coding downstream 76992 10044282 ~ 10047296 (-)
foxc1b LOC108257535,LOC107682698 coding downstream 85799 10036441 ~ 10038489 (-)
serpinb1 ileu coding downstream 214159 9903744 ~ 9910129 (-)
zgc:112001 LOC108258164,LOC108443926 coding downstream 383778 9738487 ~ 9740510 (-)
stx11b.1 LOC108257894,LOC103032305 coding upstream 3499 10132583 ~ 10135326 (-)
LOC113532347 LOC108257934,LOC108257933,LOC106674865,LOC101066992,LOC103389000 coding upstream 76937 10206021 ~ 10207614 (-)
LOC113532348 LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846 coding upstream 88658 10217742 ~ 10219584 (-)
LOC113532350 LOC108257934,LOC108257933 coding upstream 96367 10225451 ~ 10227811 (-)
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 128412 10257496 ~ 10267700 (-)
G293082 NA non-coding downstream 96285 10027305 ~ 10028003 (-)
G293057 gmds non-coding downstream 98439 9977852 ~ 10025849 (-)
LOC117599790 NA non-coding downstream 192517 9930895 ~ 9931771 (-)
G293002 NA non-coding downstream 268936 9855141 ~ 9855352 (-)
G292998 NA non-coding downstream 273886 9850183 ~ 9850402 (-)
LOC117599728 NA non-coding upstream 50882 10179966 ~ 10180689 (-)
LOC117599775 NA non-coding upstream 58737 10187821 ~ 10196281 (-)
G293276 NA non-coding upstream 116998 10246082 ~ 10246502 (-)
G293296 NA non-coding upstream 186574 10315658 ~ 10315869 (-)
G293315 NA non-coding upstream 229413 10358497 ~ 10359101 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 255647 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 280816 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 608111 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 633018 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1526121 8584193 ~ 8598167 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 402910 10531994 ~ 10538106 (-)
G293480 NA other upstream 552226 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 614555 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1939885 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1966334 12095418 ~ 12219424 (-)

Expression


Co-expression Network