fkbp1b (fkbp1b)


Basic Information

Item Value
gene id fkbp1b
gene name fkbp1b
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8584193 ~ 8598167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346069
ccaccaccaccactcaGCATACCTGCTCCTCTCTGCTGCTCATTTACACTCCTATAAGCCCAGTATATCGACATGGGTGTAGAAGTGGAGACGATATCTCCAGGCGACGGAATGCTGCAGAACGGAAAAAAGTTTGATTCCTCACGAGACAGAAACAAGCCCTTCAAATTCAAAATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGTGTTGCACAGATGAGCCTCGGTCAGCGGGCAAAAATCACCTGCACTCCAGATATGGCATACGGAGCCACAGGGCACCCTGGGGTCATCCCTCCTAATGCCACACTCATATTCGATGTGGAGCTGCTAAAGCTGGAGTGAATCCTCCACTTAAGAAGGAAGAAACTCTAACCCTCTGCCCCACCATGGAAATGCTTCCCGTGAATTTAGGGTCTCAAACTACACACTCGGAATATCCTCGTCTTCATTGCCAACCTGTGCTGCATATTTCACCTAGCTCTTtttaaacatgtgaaacactACAGCTCTAGTTTGCACATAAGCAATGTCCTATTCGATTTCGTTTGAACATTACATAGAATTATTAAATCAGCATAACCATAACATACATGTTTGAATTGAAACCACTGCCTTACTGTATTTGAAGTGGAAGCATGGTGTAATAGAAGTGACAGCTCTGCTCTTCTGTATATTAAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATATAACTTTGTCCAGCTAAATGCATAAGAAACAATAATCTGTGCTGTacttagtaatattttatatgtatccCTTATAAAATTTGCTGCAAGTATCATAGGAGTTCACAAAACCTTGCCTATGCCTGGAACAAACTGAACACTGTATCATGGAATGCTTTGGCTTCTTTGAATATTTTATCTGTCGActct
>XM_026944461.2
cctcctcctcctcctcctccaccaccaccaccaccactcaGCATACCTGCTCCTCTCTGCTGCTCATTTACACTCCTATAAGCCCAGTATATCGACATGGGTGTAGAAGTGGAGACGATATCTCCAGGCGACGGGAGAACCTTTCCAAAGAAGGGACAGACATGTGTAGTGCATTATATAGGAATGCTGCAGAACGGAAAAAAGTTTGATTCCTCACGAGACAGAAACAAGCCCTTCAAATTCAAAATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGTGTTGCACAGATGAGCCTCGGTCAGCGGGCAAAAATCACCTGCACTCCAGATATGGCATACGGAGCCACAGGGCACCCTGGGGTCATCCCTCCTAATGCCACACTCATATTCGATGTGGAGCTGCTAAAGCTGGAGTGAATCCTCCACTTAAGAAGGAAGAAACTCTAACCCTCTGCCCCACCATGGAAATGCTTCCCGTGAATTTAGGGTCTCAAACTACACACTCGGAATATCCTCGTCTTCATTGCCAACCTGTGCTGCATATTTCACCTAGCTCTTtttaaacatgtgaaacactACAGCTCTAGTTTGCACATAAGCAATGTCCTATTCGATTTCGTTTGAACATTACATAGAATTATTAAATCAGCATAACCATAACATACATGTTTGAATTGAAACCACTGCCTTACTGTATTTGAAGTGGAAGCATGGTGTAATAGAAGTGACAGCTCTGCTCTTCTGTATATTAAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATATAACTTTGTCCAGCTAAATGCATAAGAAACAATAATCTGTGCTGTacttagtaatattttatatgtatccCTTATAAAATTTGCTGCAAGTATCATAGGAGTTCACAAAACCTTGCCTATGCCTGGAACAAACTGAACACTGTATCATGGAATGCTTTGGCTTCTTTGAATATTTTATCTGTCGActcttaataaatataataatatttggaA
>XM_034313732.1
cctcctcctcctccaccaccaccaccaccactcaGCATACCTGCTCCTCTCTGCTGCTCATTTACACTCCTATAAGCCCAGTATATCGACATGGGTGTAGAAGTGGAGACGATATCTCCAGGCGACGGAATGCTGCAGAACGGAAAAAAGTTTGATTCCTCACGAGACAGAAACAAGCCCTTCAAATTCAAAATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGTGTTGCACAGATGAGCCTCGGTCAGCGGGCAAAAATCACCTGCACTCCAGATATGGCATACGGAGCCACAGGGCACCCTGGGGTCATCCCTCCTAATGCCACACTCATATTCGATGTGGAGCTGCTAAAGCTGGAGTGAATCCTCCACTTAAGAAGGAAGAAACTCTAACCCTCTGCCCCACCATGGAAATGCTTCCCGTGAATTTAGGGTCTCAAACTACACACTCGGAATATCCTCGTCTTCATTGCCAACCTGTGCTGCATATTTCACCTAGCTCTTtttaaacatgtgaaacactACAGCTCTAGTTTGCACATAAGCAATGTCCTATTCGATTTCGTTTGAACATTACATAGAATTATTAAATCAGCATAACCATAACATACATGTTTGAATTGAAACCACTGCCTTACTGTATTTGAAGTGGAAGCATGGTGTAATAGAAGTGACAGCTCTGCTCTTCTGTATATTAAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATATAACTTTGTCCAGCTAAATGCATAAGAAACAATAATCTGTGCTGTacttagtaatattttatatgtatccCTTATAAAATTTGCTGCAAGTATCATAGGAGTTCACAAAACCTTGCCTATGCCTGGAACAAACTGAACACTGTATCATGGAATGCTTTGGCTTCTTTGAATATTTTATCTGTCGActcttaataaatataataatatttggaA
>XM_034313733.1
gagtgtaaacGCACGGGGGTTCATGTCACGTGACGCTCCTGGCTCTGCTGCATGATAATGGAGAACCTTTCCAAAGAAGGGACAGACATGTGTAGTGCATTATATAGGAATGCTGCAGAACGGAAAAAAGTTTGATTCCTCACGAGACAGAAACAAGCCCTTCAAATTCAAAATCGGCCGACAGGAAGTCATCAAGGGCTGGGAGGAAGGTGTTGCACAGATGAGCCTCGGTCAGCGGGCAAAAATCACCTGCACTCCAGATATGGCATACGGAGCCACAGGGCACCCTGGGGTCATCCCTCCTAATGCCACACTCATATTCGATGTGGAGCTGCTAAAGCTGGAGTGAATCCTCCACTTAAGAAGGAAGAAACTCTAACCCTCTGCCCCACCATGGAAATGCTTCCCGTGAATTTAGGGTCTCAAACTACACACTCGGAATATCCTCGTCTTCATTGCCAACCTGTGCTGCATATTTCACCTAGCTCTTtttaaacatgtgaaacactACAGCTCTAGTTTGCACATAAGCAATGTCCTATTCGATTTCGTTTGAACATTACATAGAATTATTAAATCAGCATAACCATAACATACATGTTTGAATTGAAACCACTGCCTTACTGTATTTGAAGTGGAAGCATGGTGTAATAGAAGTGACAGCTCTGCTCTTCTGTATATTAAGGGGCATTAACAACCACTGTCTGCATTGCCACTTTTGATATAACTTTGTCCAGCTAAATGCATAAGAAACAATAATCTGTGCTGTacttagtaatattttatatgtatccCTTATAAAATTTGCTGCAAGTATCATAGGAGTTCACAAAACCTTGCCTATGCCTGGAACAAACTGAACACTGTATCATGGAATGCTTTGGCTTCTTTGAATATTTTATCTGTCGActcttaataaatataataatatttggaA

Function

symbol description
fkbp1b Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in chaperone-mediated protein folding and protein peptidyl-prolyl isomerization. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region; brain; cranial ganglion; and myotome. Human ortholog(s) of this gene implicated in Graves' disease. Orthologous to several human genes including FKBP1B (FKBP prolyl isomerase 1B).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP1B isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0033017 sarcoplasmic reticulum membrane cellular_component
GO:0005528 FK506 binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09568 FKBP1; FK506-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU346069 False 915 TUCP 0.43 3 8584217 8598143
XM_026944461.2 True 1011 mRNA 0.43 4 8584193 8598167
XM_034313732.1 False 957 mRNA 0.43 3 8584193 8598161
XM_034313733.1 False 937 mRNA 0.42 4 8584193 8597461

Neighbor

gene id symbol gene type direction distance location
mut mut,LOC107697172,LOC107726757,LOC107726528 coding downstream 1899 8562068 ~ 8582294 (-)
runx2b runx2b,runx2,LOC108258149,LOC107726745,LOC107678859,LOC103028241,LOC107697170,LOC108410521,LOC102312376 coding downstream 83497 8470888 ~ 8500696 (-)
mark3b LOC108258043,LOC108412004 coding downstream 143488 8385635 ~ 8440705 (-)
daam1b daam1b,LOC108257948,LOC108412077 coding downstream 234541 8301497 ~ 8349652 (-)
btbd6b btbd6,btbd6b,LOC107755235,LOC106571711,LOC107718408 coding downstream 677302 7903043 ~ 7906891 (-)
mfsd2b mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 8381 8606548 ~ 8627366 (-)
ubxn2a ubxn2a coding upstream 30487 8628654 ~ 8633045 (-)
LOC113545152 klhl29,LOC107742703,LOC107667613,LOC107697176 coding upstream 107245 8705412 ~ 8884899 (-)
trib2 trib2,LOC107717709,LOC107742704,LOC107667617 coding upstream 299899 8898066 ~ 8903105 (-)
napbb napb,si:rp71-81o21.2,LOC103381049,LOC106610947,LOC108411873,LOC108258064,LOC103023605,LOC107756672,LOC107667620,LOC107742707 coding upstream 348410 8946577 ~ 8954574 (-)
G292076 NA non-coding downstream 23464 8560507 ~ 8560729 (-)
G292056 NA non-coding downstream 25337 8558351 ~ 8558856 (-)
G292009 NA non-coding downstream 117176 8466809 ~ 8467017 (-)
G291969 NA non-coding downstream 158723 8420416 ~ 8425470 (-)
G291949 l3hypdh,LOC107684001 non-coding downstream 285580 8298134 ~ 8298613 (-)
G292231 NA non-coding upstream 38328 8636495 ~ 8637325 (-)
G292573 NA non-coding upstream 623849 9222016 ~ 9255248 (-)
G292695 LOC108258122,LOC108444466 non-coding upstream 809282 9407449 ~ 9407913 (-)
G292697 NA non-coding upstream 812076 9410243 ~ 9415603 (-)
G292701 NA non-coding upstream 818224 9416391 ~ 9416590 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 289619 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 916407 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1063352 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 1601384 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 2602030 5962339 ~ 5982163 (-)
LOC113545281 samd15 other upstream 890051 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 910414 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 1152824 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 1245202 9843369 ~ 9843472 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 1933827 10531994 ~ 10538106 (-)

Expression


Co-expression Network