six6b (six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975)


Basic Information

Item Value
gene id six6b
gene name six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7665134 ~ 7667786 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944598.2
CTCACTCCAGCTCTCCATATCGCCTTCCGAGGCTGAGACAGTCGGCCAAGTGTGGCaccatccatctctctcatctcagcATCCTCTAACGGCTCGTCTCCTCTCTCCGCCATTGCGTTTCTGCCTGTCTGCgttggagagggagagagacgaAGAGGCACCATAACGCGACACAAGTGTGCGCGAGCACGCGAGACGGAGCACCTCGAGGCGGGGAAAAAGTGCAGCCTTCATGTTTCAGTTGCCAATGCTGAATTTCAGCCCCCAGCAGGTAGCGGGGGTGTGTGAGACTCTGGAGGAAAGCGGCGACATCGAGCGCCTCGGTCGGTTCCTGTGGTCGCTGCCTGTGGCGCCCGCCGCCTGCGAGGTGCTAAACCGGAACGAGTCGGTGCTGCGAGCGCGCGCCATCGTGGCCTTCCACACCGGCAACTTCCGCGAGCTTTACCACATCCTGGAGAACCACAAATTCACCAAAGACTCGCATTCCAAACTGCAAGCTCTGTGGCTCGAGTCGCACTACCGGGAGGCGGAAAAGCTCCGGGGCCGCCCGCTAGGGCCGGTAGATAAATACAGGGTGCGGAAGAAGTTTCCACTGCCCAAAACTATTTGGGACGGAGAACAAAAGACGCACTGCTTCAAAGAAAGGACCAGACATTTGCTGAGGGAATGGTATCTGCAGGACCCTTATCCGAACCCGAGCAAAAAGAGGGAGCTTGCACAAGCCACAGGACTTACTCCTACTCAAGTGGGCAACTGGTTTAAAAACCGAAGACAAAGGGACAGAGCAGCAGCCGCGAAGAACAGGTTACAACAGCAGGTGTTGACTAACGGCTCGGTTACGGCGGAGGACGGCGCCGCGGACCGGCTCGGTAACGCGTCCAGCCCGGAAGCCGGTCTGTCAAGCCAAGCTGCTGCTTCCGCCATCTCCATCACGTCGAGTGACAGCGAATGTGACATCTAACGCCGCGGCGCGAGCCTCCCCGCGGGATCACCACGCagaaattaacacattaacgAAGGAATTGGAGACAGACAATCATCAAGACAAACAAGCACATCGGTGCCTGCCTTAACGTATTACAGGCTATGTTTCTGTTGTTATTGGATGGCTGTCAAAACAGCCAGAGATAAACGGAATGCTctatctttaaaaatgtatttatctttttttctttctttttttttttccataaccAAGTGTGAAATACACGAAGAGATTCGGGGgaatagatagagagagaaagagagagagagagatcctccTGTCCGTGTTCAGATTACATTAAGGGAAATCGGATACATCGGAGAAATATGAACAACGCAAAACAACCACctttttgtttgctttcagAAGGACTTCATGTTGAGTCgacatttttttctaagatgTTTAAGTATTAAAATTCGTGGCTCTAATAGAAACGTTGATTTGCTTGCTTATTTCAAGTCCGGTCGTTTTTGGTGTAAATCGTTGGGCTTTTAGAGTGCGATGAATAGTGGACATATGTTTGAATTAATT
>XR_004580142.1
CTCACTCCAGCTCTCCATATCGCCTTCCGAGGCTGAGACAGTCGGCCAAGTGTGGCaccatccatctctctcatctcagcATCCTCTAACGGCTCGTCTCCTCTCTCCGCCATTGCGTTTCTGCCTGTCTGCgttggagagggagagagacgaAGAGGCACCATAACGCGACACAAGTGTGCGCGAGCACGCGAGACGGAGCACCTCGAGGCGGGGAAAAAGTGCAGCCTTCATGTTTCAGTTGCCAATGCTGAATTTCAGCCCCCAGCAGGTAGCGGGGGTGTGTGAGACTCTGGAGGAAAGCGGCGACATCGAGCGCCTCGGTCGGTTCCTGTGGTCGCTGCCTGTGGCGCCCGCCGCCTGCGAGGTGCTAAACCGGAACGAGTCGGTGCTGCGAGCGCGCGCCATCGTGGCCTTCCACACCGGCAACTTCCGCGAGCTTTACCACATCCTGGAGAACCACAAATTCACCAAAGACTCGCATTCCAAACTGCAAGCTCTGTGGCTCGAGTCGCACTACCGGGAGGCGGAAAAGCTCCGGGGCCGCCCGCTAGGGCCGGTAGATAAATACAGGGTGCGGAAGAAGTTTCCACTGCCCAAAACTATTTGGGACGGAGAACAAAAGACGCACTGCTTCAAAGAAAGGACCAGACATTTGCTGAGGGAATGGTATCTGCAGGACCCTTATCCGAACCCGAGCAAAAAGAGGGAGCTTGCACAAGCCACAGGACTTACTCCTACTCAAGTGGGCAACTGGTTTAAAAACCGAAGACAAAGGGACAGAGCAGCAGCCGCGAAGAACAGGTTACAACAGCAGGTGTTGACTAACGGCTCGGTTACGGCGGAGGACGGCGCCGCGGACCGGCTCGGTAACGCGTCCAGCCCGGAAGCCGGTCTGTCAAGCCAAGCTGCTGCTTCCGCCATCTCCATCACGTCGAGTGACAGCGAATGTGACATCTAACGCCGCGGCGCGAGCCTCCCCGCGGGATCACCACGCagaaattaacacattaacgAAGGAATTGGAGACAGACAATCATCAAGACAAACAAGCACATCGGTGCCTGCCTTAACTGTGAAATACACGAAGAGATTCGGGGgaatagatagagagagaaagagagagagagagatcctccTGTCCGTGTTCAGATTACATTAAGGGAAATCGGATACATCGGAGAAATATGAACAACGCAAAACAACCACctttttgtttgctttcagAAGGACTTCATGTTGAGTCgacatttttttctaagatgTTTAAGTATTAAAATTCGTGGCTCTAATAGAAACGTTGATTTGCTTGCTTATTTCAAGTCCGGTCGTTTTTGGTGTAAATCGTTGGGCTTTTAGAGTGCGATGAATAGTGGACATATGTTTGAATTAATT
>XR_004580143.1
CTCACTCCAGCTCTCCATATCGCCTTCCGAGGCTGAGACAGTCGGCCAAGTGTGGCaccatccatctctctcatctcagcATCCTCTAACGGCTCGTCTCCTCTCTCCGCCATTGCGTTTCTGCCTGTCTGCgttggagagggagagagacgaAGAGGCACCATAACGCGACACAAGTGTGCGCGAGCACGCGAGACGGAGCACCTCGAGGCGGGGAAAAAGTGCAGCCTTCATGTTTCAGTTGCCAATGCTGAATTTCAGCCCCCAGCAGGTAGCGGGGGTGTGTGAGACTCTGGAGGAAAGCGGCGACATCGAGCGCCTCGGTCGGTTCCTGTGGTCGCTGCCTGTGGCGCCCGCCGCCTGCGAGGTGCTAAACCGGAACGAGTCGGTGCTGCGAGCGCGCGCCATCGTGGCCTTCCACACCGGCAACTTCCGCGAGCTTTACCACATCCTGGAGAACCACAAATTCACCAAAGACTCGCATTCCAAACTGCAAGCTCTGTGGCTCGAGTCGCACTACCGGGAGGCGGAAAAGCTCCGGGGCCGCCCGCTAGGGCCGGTAGATAAATACAGGGTGCGGAAGAAGTTTCCACTGCCCAAAACTATTTGGGACGGAGAACAAAAGACGCACTGCTTCAAAGAAAGGACCAGACATTTGCTGAGGGAATGGTATCTGCAGGACCCTTATCCGAACCCGAGCAAAAAGAGGGAGCTTGCACAAGCCACAGGACTTACTCCTACTCAAGTGGGCAACTGGTTTAAAAACCGAAGACAAAGGGACAGAGCAGCAGCCGCGAAGAACAGGTTACAACAGCAGGTGTTGACTAACGGCTCGGTTACGGCGGAGGACGGCGCCGCGGACCGGCTCGGTAACGCGTCCAGCCCGGAAGCCGGTCTGTCAAGCCAAGCTGCTGCTTCCGCCATCTCCATCACGTCGAGTGACAGCGAATGTGACATCTAACGCCGCGGCGCGAGCCTCCCCGCGGGATCACCACGCagaaattaacacattaacgAAGGAATTGGAGACAGACAATCATCAAGACAAACAAGCACATCGTGTGAAATACACGAAGAGATTCGGGGgaatagatagagagagaaagagagagagagagatcctccTGTCCGTGTTCAGATTACATTAAGGGAAATCGGATACATCGGAGAAATATGAACAACGCAAAACAACCACctttttgtttgctttcagAAGGACTTCATGTTGAGTCgacatttttttctaagatgTTTAAGTATTAAAATTCGTGGCTCTAATAGAAACGTTGATTTGCTTGCTTATTTCAAGTCCGGTCGTTTTTGGTGTAAATCGTTGGGCTTTTAGAGTGCGATGAATAGTGGACATATGTTTGAATTAATT

Function

symbol description
six6b Enables double-stranded DNA binding activity. Involved in gene expression. Acts upstream of or within camera-type eye development and cell population proliferation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; eye; and kidney. Human ortholog(s) of this gene implicated in optic disc anomalies with retinal and/or macular dystrophy. Orthologous to human SIX6 (SIX homeobox 6).

NR:

description
PREDICTED: homeobox protein SIX6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944598.2 True 1519 mRNA 0.51 2 7665134 7667786
XR_004580142.1 False 1395 misc_RNA 0.53 3 7665134 7667786
XR_004580143.1 False 1381 misc_RNA 0.53 3 7665134 7667786

Neighbor

gene id symbol gene type direction distance location
prkchb LOC108258108,LOC108434990 coding downstream 67345 7569028 ~ 7597789 (-)
hif1ab hif1a,LOC100305068 coding downstream 101090 7547098 ~ 7564044 (-)
snapc1a NA coding downstream 118954 7539918 ~ 7546180 (-)
si:ch211-212g7.6 LOC108257884 coding downstream 127463 7522861 ~ 7537671 (-)
kcnh5a kcnh5a,LOC108434995,LOC108257569,LOC107701494,LOC107563685,LOC107707078,LOC107743971,LOC107697309 coding downstream 187928 7388659 ~ 7477206 (-)
ppm1ab ppm1a,LOC108258036,LOC108434987 coding upstream 21417 7689203 ~ 7712877 (-)
ckbb ckb,LOC108257851,LOC108434982,LOC102782142,LOC100699354,LOC102312842,LOC107560383 coding upstream 165542 7833328 ~ 7837002 (-)
xrcc3 xrcc3 coding upstream 210861 7878647 ~ 7885540 (-)
btbd6b btbd6,btbd6b,LOC107755235,LOC106571711,LOC107718408 coding upstream 235257 7903043 ~ 7906891 (-)
daam1b daam1b,LOC108257948,LOC108412077 coding upstream 633711 8301497 ~ 8349652 (-)
LOC113545333 NA non-coding downstream 402852 7259917 ~ 7262282 (-)
G291198 NA non-coding downstream 645450 7017034 ~ 7019684 (-)
G291199 NA non-coding downstream 649247 7014734 ~ 7015887 (-)
G291182 NA non-coding downstream 686605 6978327 ~ 6978529 (-)
G291149 NA non-coding downstream 726369 6938538 ~ 6938765 (-)
G291593 NA non-coding upstream 8751 7676537 ~ 7767766 (-)
G291629 NA non-coding upstream 100056 7767842 ~ 7768116 (-)
G291633 NA non-coding upstream 101483 7769269 ~ 7769478 (-)
G291813 jag2 non-coding upstream 455859 8123645 ~ 8125793 (-)
G291951 NA non-coding upstream 629344 8297130 ~ 8297344 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 144293 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 682325 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 1682971 5962339 ~ 5982163 (-)
si:dkeyp-51f12.3 NA other downstream 1829652 5829107 ~ 5835482 (-)
itpa itpa,LOC107712840 other downstream 2732728 4929640 ~ 4932406 (-)
LOC113545183 LOC108258142,LOC108257835 other upstream 518957 8186743 ~ 8294574 (-)
fkbp1b fkbp1b other upstream 916407 8584193 ~ 8598167 (-)
LOC113545281 samd15 other upstream 1820432 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 1840795 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 2083205 9750991 ~ 9868641 (-)

Expression


Co-expression Network