snapc1a


Basic Information

Item Value
gene id snapc1a
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7539918 ~ 7546180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944615.2
TAGGCTCCTCCCACCAGCTCGAGCTTCCGAACGTGTTTGAGCAGGTGAGCCTAATTAACGCCGAGGCTCCGCCCACCTGTCAGTTCTCGGTCCGGATGGCGGCGGcCACAAAAACGTGTGATGTCCACTGGATTCCGTTTAAAAGCGACTGTGAGGAGCTGCTGGGACGCTTCCAGCAGACGGAGTCGGTGCGATATGAAGCGTTTGCGGCCATATGGAGAGTTATGGACTTCTCCAGTGTGTTTTATGGAATGACCACAAACTACGAGAAAAGACCCTTCAGCCGTCTCGTCTTTACCACAGTGTATGATTACTTCTTGCCCCCATACAGCTTTCAGATCCGAGTGGGGGCACTGTACATGTTCTACGGCCTTTACTTCTCACAGCCTACCTGGCCAAAGGAAAAGATCTGGATTGCACTGAAGGACTGGATGTGTATACAGAAGTTTGTCTCAGATGCTATCAGCTGTCAGCATCTGGATGTTGTATATGTCTACAGGAAGCTTGTTTTTgataaggcttttttttatacCGCCATGCCCAACCAGCTCACATTTGATGCAAAGCGCCGTTTTAAAAACAGGAGAATCAATGAGTTGTTCCAGGACCAGCGAGCCAGAGTGACAGAGCTGGTTAATCCAGGTACACTGGAGGAAATTACAAATGTGCAGGCTCATTATGAGCGGATTAAGCAGGCTCTGCATGTGTCCGCCACAGTCAGTGTGACACCAGTCAACCTAAGTGTGCAACTTGAGGAATGTGCACGTGCGTTTCACCAGTGGCAGGAAAATAACAAAAGACAGAAGAATAAAAACTCTGGAACAAAAGCAGAGGAGAGCACTCAGCCGTTAGAGtgcCCCAACAGGGCAGATCTACTGGCTACAATAAAGTCAAAGTCTTATGGGCATCTAGCAACGGCTTCCAAATCACGGCgacacagacaggtggagaTGGACACCTCGGGATCTGGCACAGACCATGCGCAAGAGTTTTTGTCTCCGCACAGAAAGAGGCAGCTGTCTCTCAGACAGAGGACCTGGCGAAAGCTGGGCAGAAAAGGGTCAGAAGAACAAAGACAACAACACTGGCTTCTAAGCACAAAGGAGGAAGACAAAGCAGCTTTGAAGAAATGCCAACAGAAGAACAGATTTAAGTGGTGAAATGTGGCACATTGTGGGAGTGGATTTGTTTCTCTCACtcagtaggtttttttttttccattggtTTCTGTTGGCAAATGTAATTCAGGAATACAAACAGAGTGGCTTTCTTGCAGTTTTTCTTAAATTCTTACCTGATTAGATTTTTGGACAGACTGTATTTATGGAACTAAACTTTAATGGTTTATTTGTCAATACgctttgtgtttattaaatagaataaat
>XM_034313518.1
TTAGGCTCCTCCCACCAGCTCGAGCTTCCGAACGTGTTTGAGCAGGTGAGCCTAATTAACGCCGAGGCTCCGCCCACCTGTCAGTTCTCGGTCCGGATGGCGGCGGcCACAAAAACGTGTGATGTCCACTGGATTCCGTTTAAAAGCGACTGTGAGGAGCTGCTGGGACGCTTCCAGCAGACGGAGTCGGTGCGATATGAAGCGTTTGCGGCCATATGGAGAGTTATGGACTTCTCCAGTGTGTTTTATGGAATGACCACAAACTACGAGAAAAGACCCTTCAGCCGTCTCGTCTTTACCACAGTGTATGATTACTTCTTGCCCCCATACAGCTTTCAGATCCGAGTGGGGGCACTGTACATGTTCTACGGCCTTTACTTCTCACAGCCTACCTGGCCAAAGGAAAAGATCTGGATTGCACTGAAGGACTGGATGTGTATACAGAAGTTTGTCTCAGATGCTATCAGCTGTCAGCATCTGGATGTTGTATATGTCTACAGGAAGCTTGTTTTTgataaggcttttttttatacCGCCATGCCCAACCAGCTCACATTTGATGCAAAGCGCCGTTTTAAAAACAGGAGAATCAATGAGTTGTTCCAGGACCAGCGAGCCAGAGTGACAGAGCTGGTTAATCCAGGTACACTGGAGGAAATTACAAATGTGCAGGCTCATTATGAGCGGATTAAGCAGGCTCTGCATGTGTCCGCCACAGTCAGTGTGACACCAGTCAACCTAAGTGTGCAACTTGAGGAATGTGCACGTGCGTTTCACCAGTGGCAGGAAAATAACAAAAGACAGAAGAATAAAAACTCTGGAACAAAAGCAGAGGAGAGCACTCAGCCGTTAGAGtgcCCCAACAGGGCAGATCTACTGGCTACAATAAAGTCAAAGTCTTATGGGCATCTAGCAACGcTTTGTGTGATAATTTCATCATAGGCTTCCAAATCACGGCgacacagacaggtggagaTGGACACCTCGGGATCTGGCACAGACCATGCGCAAGAGTTTTTGTCTCCGCACAGAAAGAGGCAGCT

Function

NR:

description
PREDICTED: snRNA-activating protein complex subunit 1-like

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944615.2 True 1385 mRNA 0.46 11 7539918 7546179
XM_034313518.1 False 1043 mRNA 0.49 9 7540602 7546180

Neighbor

gene id symbol gene type direction distance location
si:ch211-212g7.6 LOC108257884 coding downstream 2247 7522861 ~ 7537671 (-)
kcnh5a kcnh5a,LOC108434995,LOC108257569,LOC107701494,LOC107563685,LOC107707078,LOC107743971,LOC107697309 coding downstream 62712 7388659 ~ 7477206 (-)
ptk2bb LOC108258133,LOC108434997 coding downstream 155817 7358921 ~ 7384101 (-)
baalcb LOC108257534,LOC108434978,LOC107746362 coding downstream 259309 7276239 ~ 7280609 (-)
eif2b4 eif2b4,LOC106608321,LOC107701499 coding downstream 283068 7250007 ~ 7256850 (-)
hif1ab hif1a,LOC100305068 coding upstream 918 7547098 ~ 7564044 (-)
prkchb LOC108258108,LOC108434990 coding upstream 22848 7569028 ~ 7597789 (-)
ppm1ab ppm1a,LOC108258036,LOC108434987 coding upstream 143023 7689203 ~ 7712877 (-)
ckbb ckb,LOC108257851,LOC108434982,LOC102782142,LOC100699354,LOC102312842,LOC107560383 coding upstream 287148 7833328 ~ 7837002 (-)
xrcc3 xrcc3 coding upstream 332467 7878647 ~ 7885540 (-)
LOC113545333 NA non-coding downstream 277636 7259917 ~ 7262282 (-)
G291198 NA non-coding downstream 520234 7017034 ~ 7019684 (-)
G291199 NA non-coding downstream 524031 7014734 ~ 7015887 (-)
G291182 NA non-coding downstream 561389 6978327 ~ 6978529 (-)
G291149 NA non-coding downstream 601153 6938538 ~ 6938765 (-)
G291593 NA non-coding upstream 130357 7676537 ~ 7767766 (-)
G291629 NA non-coding upstream 221662 7767842 ~ 7768116 (-)
G291633 NA non-coding upstream 223089 7769269 ~ 7769478 (-)
G291813 jag2 non-coding upstream 577465 8123645 ~ 8125793 (-)
G291951 NA non-coding upstream 750950 8297130 ~ 8297344 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 19077 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 557109 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 1557755 5962339 ~ 5982163 (-)
si:dkeyp-51f12.3 NA other downstream 1704436 5829107 ~ 5835482 (-)
itpa itpa,LOC107712840 other downstream 2607512 4929640 ~ 4932406 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other upstream 118954 7665134 ~ 7667786 (-)
LOC113545183 LOC108258142,LOC108257835 other upstream 640563 8186743 ~ 8294574 (-)
fkbp1b fkbp1b other upstream 1038013 8584193 ~ 8598167 (-)
LOC113545281 samd15 other upstream 1942038 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 1962401 9508581 ~ 9516177 (-)

Expression


Co-expression Network