LOC113545281 (samd15)


Basic Information

Item Value
gene id LOC113545281
gene name samd15
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9488218 ~ 9491270 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346830
CAATTAAGCGCGAGCACAACATGAAACCCCAACACAGCTAAATGAAATTAAGAGCTGCACAGCGTAGGAGGCAGCAGGGCTGTTACTGCCGCTTAGGAGCACAATACTCTGTTAAAACATGCACAGTCTACCATTTCATGACAGAActttagaattattttttcatttctcaatTCATAccccaatttatttattttgtttatgtattttaccagtcgctctctctcgctctcttccGGCGCGCAGTATGCAAATTAACTTGCCTGGAAACTACTTTTCATTGGATGaagtgttgccatggcaacacgaCAACATGCAAAAATGGCGTTCCTTCAGTGGAGCTGCCAGGACGTGGCGAGGTGGATAGAATCACTCGGATATCCCCAATACACGGAATCACAGACTTTGAACATATGAAGGCAATCTCAGCACGTGTCCGTGAGCTGCTAGGCATCTCGGAGCCATTGTGGAGTCGCAGTATTGCAGACCCTCCACAAGATGATATGAACATGTTTTTGGAAGTCAAAAGCAGGACTGGAGAAAGCGCTGATTCCCTTACCTACACTCAATTCCTCAATTACCGAAAGAAGTAAACAGAAAGATTACAGTATAAACAGCTTATGaagttcaatttaaaaaaaaaaaacctgaaaaacattaaagcttttcttttaattataattagcTTTACCAATTTGTCTGAGGAGCTTCATTACATTTACTGTTTTTCACAACGTGATTTATCCCTGGTGTGTGATTGTGGGGAATAGGCTATGGCTTACTGGGCTTTGCCTTCGTAATTTAAGCATTCTTTGTCTTATGTGTTTTACAGTGCTAGTGAATTAGAAGTTATTTAAGGTTTTATAATTTGGCCTGTAGTACAACTGGGCTCATTTGGCCTAAtcctttttcattattttagtaGTATGAAACCCAAATACATACTGTAGCTTTGGGAATAATTTTACATCAACCATTAAAAAGAATGTATAAATTCCTAGGGCTGCACCAATCTGATAATGAGCATCGGTATCAAAGCCAACACTGGCCTGAAACACTGTATTGGCACTGGACTGGATTGGACACGGTTTccaaaatgattatattttatggTGCGAGTGTGCGTTATACTGACCGACACAACACAGATCTTGCACGTAAACACAGGACACAACTTGTCTTAAAGCACACCAGCATTGTACATACGTTCTGCACTGTTTGGCAACATAAACTGGCAGAGGGACAGCCTGGTTCTGGGGACACCAGTGGAACTGATCTATAATGCTTAttgctgcatgtttttatttgagCAAGGCATGTATGCTCACTCAGAGCACTCTGAAAAGAAGAAGATAGATTAATAATcctcttcattttgttttgggCTGAAATGTAATATAGCTTTGCTCCGAGTAGAAAATGAACACTTAAAGAATTTCAGGaacattaatgtttttgttattaacC
>XM_026944548.2
AAGCGCGAGCACAACATGAAACCCCAACACAGCTAAATGAAATTAAGAGCTGCACAGCGTAGGAGGCAGCAGGGCTGTTACTGCCGCTTAGGAGCACAATACTCTGTTAAAACATGCACAGTCTACCATTTCATGACAGAActttagaattattttttcatttctcaatTCATAccccaatttatttattttgtttatgtattttaccagtcgctctctctcgctctcttccGGCGCGCAGTATGCAAATTAACTTGCCTGGAAACTACTTTTCATTGGATGaagtgttgccatggcaacacgaCAACATGCAAAAATGGCGTTCCTTCAGTGGAGCTGCCAGGACGTGGCGAGGTGGATAGAATCACTCGGATATCCCCAATACACGGCTTGTTTTACTGAGAATTTCATCACAGGCAAAAAGCTGATTTACATAAACTGCTGTTATTTGCCTCGATTAGGAATCACAGACTTTGAACATATGAAGGCAATCTCAGCACGTGTCCGTGAGCTGCTAGGCATCTCGGAGCCATTGTGGAGTCGCAGTATTGCAGACCCTCCACAAGATGATATGAACATGTTTTTGGAAGTCAAAAGCAGGACTGGAGAAAGCGCTGATTCCCTTACCTACACTCAATTCCTCAATTACCGAAAGAAGTAAACAGAAAGATTACAGTATAAACAGCTTATGaagttcaatttaaaaaaaaaaaacctgaaaaacattaaagcttttcttttaattataa
>XM_026944550.2
GAGTCCAGATGAATGACCAGCAGCTGGAGCAGTAGTGATGCATGAACGCAATTAAGCGCGAGCACAACATGAAACCCCAACACAGCTAAATGAAATTAAGAGCTGCACAGCGTAGGAGGCAGCAGGGCTGTTACTGCCGCTTAGGAGCACAATACTCTGTTAAAACATGCACAGTCTACCATTTCATGACAGAActttagaattattttttcatttctcaatTCATAccccaatttatttattttgtttatgtattttaccagtcgctctctctcgctctcttccGGCGCGCAGTATGCAAATTAACTTGCCTGGAAACTACTTTTCATTGGATGaagtgttgccatggcaacacgaCAACATGCAAAAATGGCGTTCCTTCAGTGGAGCTGCCAGGACGTGGCGAGGTGGATAGAATCACTCGGATATCCCCAATACACGGAATCACAGACTTTGAACATATGAAGGCAATCTCAGCACGTGTCCGTGAGCTGCTAGGCATCTCGGAGCCATTGTGGAGTCGCAGTATTGCAGACCCTCCACAAGATGATATGAACATGTTTTTGGAAGTCAAAAGCAGGACTGGAGAAAGCGCTGATTCCCTTACCTACACTCAATTCCTCAATTACCGAAAGAAGTAAACAGAAAGATTACAGTATAAACAGCTTATGaagttcaatttaaaaaaaaaaaacctgaaaaacattaaagcttttcttttaattataa

Function

symbol description
samd15 Orthologous to human SAMD15 (sterile alpha motif domain containing 15).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346830 True 1467 TUCP 0.40 3 9488218 9491222
XM_026944548.2 False 749 mRNA 0.41 3 9489004 9491217
XM_026944550.2 False 729 mRNA 0.42 3 9489004 9491270

Neighbor

gene id symbol gene type direction distance location
lrfn5b lrfn5b,LOC108257655,LOC108411613,LOC107659815,LOC107712211,LOC107564320 coding downstream 545 9481156 ~ 9487673 (-)
magl NA coding downstream 106442 9361026 ~ 9381776 (-)
LOC113545202 LOC108258089 coding downstream 129706 9338448 ~ 9358512 (-)
pak7 pak5 coding downstream 160710 9265874 ~ 9327508 (-)
trnae-cuc_39 NA coding downstream 287107 9201040 ~ 9201111 (-)
cipcb cipc,LOC107575300 coding upstream 29380 9520650 ~ 9526166 (-)
pgfa LOC108258015 coding upstream 36909 9528179 ~ 9530954 (-)
actr10 actr10,LOC106571574,LOC106608088 coding upstream 43007 9534277 ~ 9542028 (-)
LOC113545273 naa30,LOC108258186,LOC106611024 coding upstream 64892 9556162 ~ 9561276 (-)
LOC113545269 peli2,LOC108258111,LOC103047193,LOC108410474,LOC100334245,LOC107567396,LOC107574485,LOC106571579,LOC104919819 coding upstream 100112 9591382 ~ 9604883 (-)
G292701 NA non-coding downstream 71628 9416391 ~ 9416590 (-)
G292697 NA non-coding downstream 72615 9410243 ~ 9415603 (-)
G292695 LOC108258122,LOC108444466 non-coding downstream 80305 9407449 ~ 9407913 (-)
G292573 NA non-coding downstream 232970 9222016 ~ 9255248 (-)
G292231 NA non-coding downstream 850893 8636495 ~ 8637325 (-)
G292807 NA non-coding upstream 121273 9612543 ~ 9612781 (-)
G292821 NA non-coding upstream 176445 9667715 ~ 9669849 (-)
G292998 NA non-coding upstream 358913 9850183 ~ 9850402 (-)
G293002 NA non-coding upstream 363871 9855141 ~ 9855352 (-)
LOC117599790 NA non-coding upstream 439625 9930895 ~ 9931771 (-)
fkbp1b fkbp1b other downstream 890051 8584193 ~ 8598167 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 1193644 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 1820432 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1967377 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 2505409 6936128 ~ 6982809 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 17311 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 259721 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 352099 9843369 ~ 9843472 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 1040724 10531994 ~ 10538106 (-)
G293480 NA other upstream 1190040 10681310 ~ 10681690 (-)

Expression


Co-expression Network