G292821


Basic Information

Item Value
gene id G292821
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9667715 ~ 9669849 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346936
GAAAACACATAGCTCCCTGTATATCTAGCCCCTTGGACATGTAATTTGCAATATTGGCTTTCAATTTTACTCTGATGATACACAATTATGTTTGTCCAAATCAGCAGCACAGCTATGAAAATCTgaagaatgtgtaaaagacaaaGGTTTGGATGAATAGATATTTCCTTCTTCTAAAttctgacaaaacaaaaatattgatgTTGGGCATTAAGTCTTTCTGCCATAAGGTTGCTGATTTCACCTTGGAGCTTAATGTCTTCTGTAAGTTTCCAAAAAGCTTCAGCTAATTCAGAAATCAGCAGCCCACATCCTTCTCAGTCAGAGCACACTACTCCAGTTTTAATAAAGCTACACTGGCTGCCTATTAAGTTCCAAATTGACTACAAAGTCCTGCCTACTACCTTTCAATCGCTGAAAAAGCTTTATTCTGTGGaccatatgttttggatcactgtcctgctgaaagatCCAAATACTGCCTCTGCCAGTTGTAACCTGGCAAAGGCAGACAGTTTTGACCTCATCATACTTAACAGTGGGAATTgggttcttttctttttaacactAAACCCTTTTTGAGTTTTGCCAAAAAGCTCTATTCATGTCTCATATGACAGTATAACAtgctttgaaaaataaatttgttaagCAGTGGCACTACAAAAGAAATAGTCAGTACACCATGTACCCCTTACCATCAATTTGGTCAATCAGGTACAACCtatttggtgtctgaagtttgctcgTTTGGCTTGTAATCTAGCAAACAAGcaatacatttttacagttacaaGATCATTACGACTCTGAGCAAGCAACAGACTTAGGGGGAGATGTGATGTCTGAACTACACCGTAATGTTTGTTTGCAATGTTTAAACTACACCTTTCAACTGATTTGAAGTACTAACAGGAACTGTGCATTTACTTTTTTGTGATATGAATGTATTCTGCTACTTTaagaaacaaattatttaacatGCACATGTTACATGTGTACTtaagcaaaaccaaaaaatgtGAACTTCAGGACAGGTTTCTTGATACAGTTGTAAGAAATGCTTTGTTGGTTTACAAACTTTCCTCTTCCTATCACtggctgtacaaaaacatacaaattgGAGGTAATCGTTTGACCTTGTTGAAGAGGAAAGCACGGCCTGTTGCTCCTGTGAAGCGTGTGGAGATGAGCTCAGAGCGATTGGTCAGGATTGTGTCGCAGTTAGCACATGAGAAGAGGCGAGTGCCTCCAATGTGGTCCAGGAAGATACGGCCCATCGTGCTttttgttcttcttgtAACTTAATCCGTTCGTTTAAAACAGAACCGTTTTGGCTGACAAGGCTTTCTACCCGATTTTTTTCGATGGTTCTTCTTTCTATGtcaatgttgttttgttttgttttgttttttcccaaaCCTTTCTTTCAAAGCGTCCGTCTGTTTTGGTGCTGTGTTGATATGCTCTCAGCTGTTCCGCAGCCTATAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346936 True 1491 lncRNA 0.39 2 9667715 9669849

Neighbor

gene id symbol gene type direction distance location
LOC113545259 LOC108257774 coding downstream 5514 9637829 ~ 9662201 (-)
fkbp3 fkbp3,LOC102796769 coding downstream 31825 9631114 ~ 9635890 (-)
arf6a arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149,LOC101063995 coding downstream 50578 9614621 ~ 9617137 (-)
LOC113545269 peli2,LOC108258111,LOC103047193,LOC108410474,LOC100334245,LOC107567396,LOC107574485,LOC106571579,LOC104919819 coding downstream 62832 9591382 ~ 9604883 (-)
LOC113545273 naa30,LOC108258186,LOC106611024 coding downstream 106439 9556162 ~ 9561276 (-)
LOC113545266 LOC108258163 coding upstream 6757 9676606 ~ 9703412 (-)
LOC117599776 LOC108258163 coding upstream 34940 9704789 ~ 9711486 (-)
LOC113545260 LOC108258163 coding upstream 55418 9725267 ~ 9731826 (-)
zgc:112001 LOC108258164,LOC108443926 coding upstream 68638 9738487 ~ 9740510 (-)
serpinb1 ileu coding upstream 233895 9903744 ~ 9910129 (-)
G292807 NA non-coding downstream 54934 9612543 ~ 9612781 (-)
G292701 NA non-coding downstream 251125 9416391 ~ 9416590 (-)
G292697 NA non-coding downstream 252112 9410243 ~ 9415603 (-)
G292695 LOC108258122,LOC108444466 non-coding downstream 259802 9407449 ~ 9407913 (-)
G292573 NA non-coding downstream 412467 9222016 ~ 9255248 (-)
G292998 NA non-coding upstream 180334 9850183 ~ 9850402 (-)
G293002 NA non-coding upstream 185292 9855141 ~ 9855352 (-)
LOC117599790 NA non-coding upstream 261046 9930895 ~ 9931771 (-)
G293057 gmds non-coding upstream 308003 9977852 ~ 10025849 (-)
G293082 NA non-coding upstream 357456 10027305 ~ 10028003 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 151538 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 176445 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1069548 8584193 ~ 8598167 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 1373141 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 1999929 7665134 ~ 7667786 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 81142 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 173520 9843369 ~ 9843472 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 862145 10531994 ~ 10538106 (-)
G293480 NA other upstream 1011461 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 1073790 10743639 ~ 10746759 (-)

Expression


Co-expression Network