Gene
RNA
| Item | Value |
|---|---|
| gene id | G293002 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 9855141 ~ 9855352 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU347144 | True | 212 | lncRNA | 0.39 | 1 | 9855141 | 9855352 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zgc:112001 | LOC108258164,LOC108443926 | coding | downstream | 114631 | 9738487 ~ 9740510 (-) |
| LOC113545260 | LOC108258163 | coding | downstream | 123315 | 9725267 ~ 9731826 (-) |
| LOC117599776 | LOC108258163 | coding | downstream | 143655 | 9704789 ~ 9711486 (-) |
| LOC113545266 | LOC108258163 | coding | downstream | 151729 | 9676606 ~ 9703412 (-) |
| LOC113545259 | LOC108257774 | coding | downstream | 192940 | 9637829 ~ 9662201 (-) |
| serpinb1 | ileu | coding | upstream | 48392 | 9903744 ~ 9910129 (-) |
| foxc1b | LOC108257535,LOC107682698 | coding | upstream | 181089 | 10036441 ~ 10038489 (-) |
| foxf2b | LOC108257536 | coding | upstream | 188930 | 10044282 ~ 10047296 (-) |
| foxq1b | LOC108257547 | coding | upstream | 199781 | 10055133 ~ 10056741 (-) |
| irf4b | irf4,LOC108257893 | coding | upstream | 268936 | 10124288 ~ 10129084 (-) |
| G292998 | NA | non-coding | downstream | 4739 | 9850183 ~ 9850402 (-) |
| G292821 | NA | non-coding | downstream | 185292 | 9667715 ~ 9669849 (-) |
| G292807 | NA | non-coding | downstream | 242360 | 9612543 ~ 9612781 (-) |
| G292701 | NA | non-coding | downstream | 438551 | 9416391 ~ 9416590 (-) |
| G292697 | NA | non-coding | downstream | 439538 | 9410243 ~ 9415603 (-) |
| LOC117599790 | NA | non-coding | upstream | 75543 | 9930895 ~ 9931771 (-) |
| G293057 | gmds | non-coding | upstream | 122500 | 9977852 ~ 10025849 (-) |
| G293082 | NA | non-coding | upstream | 171953 | 10027305 ~ 10028003 (-) |
| LOC117599728 | NA | non-coding | upstream | 324614 | 10179966 ~ 10180689 (-) |
| LOC117599775 | NA | non-coding | upstream | 332469 | 10187821 ~ 10196281 (-) |
| LOC113545371 | NA | other | downstream | 11669 | 9843369 ~ 9843472 (-) |
| znf410 | LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 | other | downstream | 338964 | 9508581 ~ 9516177 (-) |
| LOC113545281 | samd15 | other | downstream | 363871 | 9488218 ~ 9491270 (-) |
| fkbp1b | fkbp1b | other | downstream | 1256974 | 8584193 ~ 8598167 (-) |
| LOC113545183 | LOC108258142,LOC108257835 | other | downstream | 1560567 | 8186743 ~ 8294574 (-) |
| LOC113531858 | scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 | other | upstream | 676642 | 10531994 ~ 10538106 (-) |
| G293480 | NA | other | upstream | 825958 | 10681310 ~ 10681690 (-) |
| id2b | LOC108257525 | other | upstream | 888287 | 10743639 ~ 10746759 (-) |
| saysd1 | saysd1 | other | upstream | 2213617 | 12068969 ~ 12075508 (-) |
| LOC113532050 | LOC108257549 | other | upstream | 2240066 | 12095418 ~ 12219424 (-) |
