G292697


Basic Information

Item Value
gene id G292697
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 9410243 ~ 9415603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346782
TTgttgtcattaaaaaaagtgCATGACCTAGCGACACTGATAAAAACACATCCCCCCAGCCCCATTTAAAAATAACCTCTGTTTAACCACTGTTCTATTCTATCAAAATATATGTTAGCAGTAAGCATTAAACTAgcaacacagaaacaaacattaAGTTTAGTATTGGTCAGAGTaagggaattaaaaaaaaaaaacttgttttttggTCACTGTGTTTAAAAGGAATTCTGAATCGTACAAAAGCATATCAGCAATTTTTATTGCAACAAAGTGGTCAACCAAGGTGACTtagataaaatgtaaatagtcaaTTTAGAGACAGAAACCTGCTTCTCACTTCTAATCTCCTTATGAAAATTggcatgtacaaaaaaaatctattatatTTGCAAAAGGACTTAGTCCAAATTTCCTGATAATCTGATAAGTTGACCACTGTGATGAAAAACTTGCTGTAGAGGCTTCCATGAGGAGCGCTCCCGAGGCCTTCCTGGCACAGGCTGGTTATCTGATGTTCAGGAGACCTCAAAGAGCACAGGCTTTATGATGaaaattaaagacaaaaagaaaaaaacaaaacacaaaaacagcagaCTCTATCTCACAATGACCAAACGAACAGTGGAGTGACACTGTCGTCACCGGCTGTTCTCGTTCCAAAACGTATTCAGAGTACAGCATTCTCAAGTTTATTGACTTTTCCTGCCACGTTTGTAACAAGTTAAATTGCAGTTCCTTGTACAAGTGTAATTAAGAGATATTTGGCCCGTTTCCTGTGAATCAAACCAAGACAACTCATAGTAAATGGGCAAAGGCCACAtgtaaaatgaatattataagAAACTACAAAACTGACTCATAAGAACTGATCATTCAAGTACCTGTCTGATTGGTTTGGTGACAGAAAGTCTTTCTGCAGTGTTGTACAGGGTAACCCCACGTAGATGCAATATACACACAAAGGGGCACCAGTTTAAGAGTGTGCTTTGGTCTTTAACCCTTGATGCCCAGTACACCATAAATACAACAGTTtcagtttttaatcatttcaccAAAGACTTCataatttataaaagaaaaaaaaaaaaaaaaaaaaagaaaacatatggCATTCACTGACAAGTATTGCAACAGCACTTCAAAACACTTTAAAACTAAGATGACTTGTTTACTTGAAATATAGATATCTATATTGTTTCTTTaatcaatgttaaataactttaaatagaGTTACtcataagtaataaaaatgtattgtgcAACATTTTATCTTATTTGAAACATGATCGGGTGATTCTTCAATAACCAAGATATGTACAATTAATTTCTTCTACATGAATGGCTCTCGAGTAGTCCATAACTTTGGATTcaatctaacaaaaaaaaattaaacactgtcCATGTTTTAGCTTATGCCTATTTGGTTATTACTATTTTCAATTTATAATCCACgtcaaaacaatttttaaatcgGTTAAAACAATATAAGTAATTTGATTTAAATAGATTCCTCAAAAATAGTcccaaaaaatatattgcatattCTACCTTTAGAAATAGCCTTAATAAAATATCTCATGTTTGCAGGAGAAAttgaaaaacagagaaacatttttttacGAATATGGGATCAaaaacatcatttcattttaaccacaatattattattatatctatttttgttttaaagaagaCCTGCTGATCAAGTTATAATTGCAGCAAAATCTGTGCCAATGATACAATGGAATAAAACAGCTTCTGGgtatttcacacacattaaacatacatttatatataatatatataataatgctGGAAAGCCATCTAAGCTACCTTACTGAAGAAATTCTGATCCCACTGTACAACAGTTCAACATGTCAATAATTCATATATAAGCATGGAGATGGTTTATGGGTAAAGCATtagaaatgcaaatgaaaagcaGTCCTAAACTTAAGCATCTCAAACACTGAAAACTACTTCAAATAAACTAGCGTTAGCTAATCTAAAAAGTGCTAATTATTACTCATTTTTTGTTCAAAAGCTTAGAGGTCACTACTGGTAAAATACAAGAAGAGTTATCTCTAAGCACATAGGCCCTGATTCAACCAACACAATTAATAAGATTCACATAGTCATTAGAATTCCGGTTTCGATGACAATAAAGGCTACACGGATAGTGGAGCGcagtgctttcacatatgcagcgTATAGTCTGAGGCGCAAACTGAGCCAAAAaacagagctgtagcactgcagTCATGCCATGGGTTCTGGGTGGTTGCATTgacaaataaaaaggaaaaataaatgcttaatgCGATACACAAAAAGTCTGAAAGTATTTATTGATAATtatctaataatttatttagcGCTGACTCTGGGTTCTCCATGTTTGAATGATTCCTGTGATAACTATGCACGCTTAGCAAagctttctttaattttaattttttctgtcGCCATACATCCAGAATGAAAACGTTACAGCCTTACACACTTTTCagtaggcttgtgcgatatttcGATATTATCATCCCTACATAATATTACATCGCCACGATATCCAGTGacgtattatattatattaccagacttGCCAGCCATTACGcattttgcgtaggagctcCACGAAATCATTTGCGTACTCTAGTGTTAGATAGTAAAAGGTTACCGTTTAGACGcactgcattgtgggtattGTAGTTTGGGGTGGGGGTTAgggctgtgagtgtgtgtgaggtgcagCCAGATGGTGCGACTTTTTTTAGCCACTGGAAGTAAAACTGGAATATTGCCACACTCTCTCCTGACTCATCATTGTGACCAGAAAAAACTGAGAATATGAAAATTACCTCAGAGTGGCAGAAGGTTTGTGCTCCAGCCCCAGAGCTCTCAGAGAACAGAGGCTCTTTTGAGCAGGAAAGGTAACACTAGTATAAGTTTTCTCCCCAATAAAATGGGAGATGAGGCAATCGACCTATGAATCTGGATTGATCTGCGCCCCCTTCCCCATCATTATCATTAGACAAGTACATATGTGACATCAGTTTACTAtgtttattagggatgccactgAAAGGTTTTGGCTGAAAATCATCAAAAAGCTTTTGGTTTTTCtgctgaaagaggaaaaaaaccaCCAAAGATTTTGAcccaaaaagattaaataggcctacaagGAAACGTCAAATAGGAGGTTATTAAATTAGAATGTGATTTAAtacgttgttttgttttctttttttcctgctcagCACTGACCAGCATTAACAGCGAAAATGCTTGCCGCATGAATGTTAGACAAAcaatttgtaaaaggattatatccAAATGTGCAgttatgtgggttttttttttaactatttactgtgcattactgcagaatcacttaaaaatccacAGTCCACCTGAGTTTTCATGATTGCCGTAGTTTCCGATTGCACAGCTGGTTATATTATTACACCTCCCCTATTCTCCTTAAACCATGACggaaattttcctttttttttttaagtctatgggttccattttaaaatggaaaatcacaATCAGGGATAaatcaatatcgcacaagcctaccCCTTAGCcgatgttttttgctttttggtttgtttaattatgtgtagTGTGAAAGCAAACCAAAAAAATCGCAAGTGAAACCAACAATTTCGATTTCGCTCTGATTCAGACATGTCAAATTATTAACAGGTGTAAAAGCGCCCTTGCATTTAGGTTGGTACATCACACATGTACGTTAACAAGACCACATATACTTAACAAAGAGAACTGCCAAAACAGTATGACTTTCCTGTTGTTAGAATTAGCtatacatttattctttttttctgttataaataaaaaaacttctaTAAAGAAGTTTCTATCCTTCCTGTGCACTTCCTTGCTGACCAAATCACTGTCATGAACTGTGATAGAATCAAAAAGGAAGAcctaaatgtaaattaaaataatagcagaggaggaaagaaaagaaaatcaaggAATGGATTAGTGCAATTTAACTAGGGTGACTAGAAGCAAAGAAAAATGGACACATGCAGGATTTTATCAAATAAATGTGTCAAATAAGTTCATTGTAAGTATTATAAGTATCACCACTCAATACATGATAAATATCTTTACTTGAAAAACAAGTGTCAGCTTTGCTTCCTGTGGAATTATAGGGCACAGATCCTGGGGGATACTTAGTGACAACAGAGATTAGCACTGTGCTGACCTTTGGTTTTAGTATAGGAGTTAAATTCTTAGAGGTTTCGGTCAAAACTAGCTGCCAACCGAGTGACCTGCATGTCATGCAAAGCAAGACATGAGAAGAAAACAAGCACGACATCAAAGCAAGACATGAGAAGAACGAAAAAGACAAACATCACAGAGTGACACCCCCCGCAATAAAGCAAAACATGAGAAGAACGAAAAAGACAAGCATCTACTCTTGCAGACATTTCATTGGTGGACTGAAGAGTCACTTGCCCATTCAATGAAATGGGAAAATTTACTACACTTAGTCCCacataaagaaaaacacaggaaCAGAAAGCATTTGCCCCAACACAAACAAGAAAATCTGTCcactttctcatttcttttttcatccaAATAGCCAGGCTCTCCTAAACAGGAGCGCGAGATTATCTTAAGGACTCTGTTTGAGCCTACGACTAAAGCGACACTTTGAAGAAATTGGATCTGATTACACTCTTCATCTGAAATGGCAGCTTCGTCTGATTTCCCCTGCCAGTGTCATAGTCCAGTGTACAAGACAGATCTCCAAAGAGAAATACAGAACCCCTTCCAACTTTAAATGgaagagtaaataaaaactaaatttctactgagaatttaaaaaatctaatcaaGAACTCAATAAAGCTGTCATTTCCGTTCTTCTATAGCACTCACTTTAGATGCTGCCACTCTGGGAATGTGGAGACAGTTAAAAATAGTCTTGTCCAACAGCCCCAGACCTCCCTGAGGTCTACCCTCCTGAGCgaataataagaaaaacagaTCATTCACGTTTTCAACAATAAATCAGGATTTTCAGAACAAAAAGGCCAGTAGGTTGCACAGGGATCGTTTTAGTATGAAGGCTTTCCATCATTAGTgaggtgcaggtgtgtgtgcgctgcATGCAGGCTTGCACCCTTACTGCAGGTTCTTCAGTATGCGGCCGTAGCGGAAGTCGTAGACATGGCGGCATAGGTAAACCAGTTCGGGATCGACATCATCGGGCACAAGTCGGTGAGTGGGAACAGCACTGTCAGAGGGCCGGGGCACCATGGGGACGCTGTCGGGTACACCCTCTGAGCGGCGCTTTACCAAGGCACAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346782 True 5361 lncRNA 0.37 1 9410243 9415603

Neighbor

gene id symbol gene type direction distance location
magl NA coding downstream 28467 9361026 ~ 9381776 (-)
LOC113545202 LOC108258089 coding downstream 51731 9338448 ~ 9358512 (-)
pak7 pak5 coding downstream 82735 9265874 ~ 9327508 (-)
trnae-cuc_39 NA coding downstream 209132 9201040 ~ 9201111 (-)
fermt1 fermt1,LOC106571740 coding downstream 393492 9004660 ~ 9016751 (-)
lrfn5b lrfn5b,LOC108257655,LOC108411613,LOC107659815,LOC107712211,LOC107564320 coding upstream 65553 9481156 ~ 9487673 (-)
cipcb cipc,LOC107575300 coding upstream 105047 9520650 ~ 9526166 (-)
pgfa LOC108258015 coding upstream 112576 9528179 ~ 9530954 (-)
actr10 actr10,LOC106571574,LOC106608088 coding upstream 118674 9534277 ~ 9542028 (-)
LOC113545273 naa30,LOC108258186,LOC106611024 coding upstream 140559 9556162 ~ 9561276 (-)
G292695 LOC108258122,LOC108444466 non-coding downstream 2330 9407449 ~ 9407913 (-)
G292573 NA non-coding downstream 154995 9222016 ~ 9255248 (-)
G292231 NA non-coding downstream 772918 8636495 ~ 8637325 (-)
G292076 NA non-coding downstream 849514 8560507 ~ 8560729 (-)
G292056 NA non-coding downstream 851387 8558351 ~ 8558856 (-)
G292701 NA non-coding upstream 788 9416391 ~ 9416590 (-)
G292807 NA non-coding upstream 196940 9612543 ~ 9612781 (-)
G292821 NA non-coding upstream 252112 9667715 ~ 9669849 (-)
G292998 NA non-coding upstream 434580 9850183 ~ 9850402 (-)
G293002 NA non-coding upstream 439538 9855141 ~ 9855352 (-)
fkbp1b fkbp1b other downstream 812076 8584193 ~ 8598167 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 1115669 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 1742457 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1889402 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 2427434 6936128 ~ 6982809 (-)
LOC113545281 samd15 other upstream 72615 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 92978 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 335388 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 427766 9843369 ~ 9843472 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 1116391 10531994 ~ 10538106 (-)

Expression


Co-expression Network