G292231


Basic Information

Item Value
gene id G292231
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8636495 ~ 8637325 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346232
CTGTGCTCTCCTTCCACCATTTGTTGTGTGAAATTGTGTTGTTAAAAGTAGTTCAGAAcagcagtgaacacacactgaccatcagCCGGGCaaactgtgttgtgtttatctctgtgtgtgCTGTCAGGTGCCTGAGTCCGTGACAAAAGCTCAACTTGCTAACTAGCtcagctagctaacgttagttCCTCTCAGGCACAACAGCAACACAAAGGGAGAACTTGGGGGCACTTAGTCCAATAAACTAGTAAGCTAGCGAGCTattgttttaatcttttttttctaagtggAAAAATGTCCAGCAACGATAATACATGTCGCGTCTCACACAAATacagaatgtttttaataaatagtgtCACTCTTTCACGGTATTCATGAACAAAAGAGGTAAGCTAGCTGGCTATCAATGAGGGACATCAATCTTCAGGCCAAACTGAGTAGCTTAGCTTAGCGTAGCttagcttagtttagcttagcttagcttagcttagcttagcatagcagagcagagcagagcagagcagagcataGCTCGCTGTAAGCAAACTGGCTTAACCAGCCGGGCAGTGAGGAAAAGCGAGCCGGCTCTTACATGGTTGTGTTCTTCCAAGTTTGGGTTGTTCCTAAGAGACGACCTCGTCCGCCCGGAGATGACAGGACTGCATGGCTGGAGCTGCGTGCTTTTTCTTGTGTtcaccatgtttttttctctaccGTATTGTTTCCTCTCGGCTCTGTCAGTTCCCTCTGTATTGACTGTCTCTCAGCTAGAGTGCCGAGGCGCCAtttctctcgctcactctctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346232 True 811 lncRNA 0.46 2 8636495 8637325

Neighbor

gene id symbol gene type direction distance location
ubxn2a ubxn2a coding downstream 3450 8628654 ~ 8633045 (-)
mfsd2b mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding downstream 9129 8606548 ~ 8627366 (-)
mut mut,LOC107697172,LOC107726757,LOC107726528 coding downstream 54201 8562068 ~ 8582294 (-)
runx2b runx2b,runx2,LOC108258149,LOC107726745,LOC107678859,LOC103028241,LOC107697170,LOC108410521,LOC102312376 coding downstream 135799 8470888 ~ 8500696 (-)
mark3b LOC108258043,LOC108412004 coding downstream 195790 8385635 ~ 8440705 (-)
LOC113545152 klhl29,LOC107742703,LOC107667613,LOC107697176 coding upstream 68087 8705412 ~ 8884899 (-)
trib2 trib2,LOC107717709,LOC107742704,LOC107667617 coding upstream 260741 8898066 ~ 8903105 (-)
napbb napb,si:rp71-81o21.2,LOC103381049,LOC106610947,LOC108411873,LOC108258064,LOC103023605,LOC107756672,LOC107667620,LOC107742707 coding upstream 309252 8946577 ~ 8954574 (-)
gpcpd1 gpcpd1,LOC107593247,LOC107742708,LOC107697181 coding upstream 319104 8956429 ~ 8975562 (-)
trmt6 trmt6 coding upstream 353648 8990973 ~ 9002433 (-)
G292076 NA non-coding downstream 75766 8560507 ~ 8560729 (-)
G292056 NA non-coding downstream 77639 8558351 ~ 8558856 (-)
G292009 NA non-coding downstream 169478 8466809 ~ 8467017 (-)
G291969 NA non-coding downstream 211025 8420416 ~ 8425470 (-)
G291949 l3hypdh,LOC107684001 non-coding downstream 337882 8298134 ~ 8298613 (-)
G292573 NA non-coding upstream 584691 9222016 ~ 9255248 (-)
G292695 LOC108258122,LOC108444466 non-coding upstream 770124 9407449 ~ 9407913 (-)
G292697 NA non-coding upstream 772918 9410243 ~ 9415603 (-)
G292701 NA non-coding upstream 779066 9416391 ~ 9416590 (-)
G292807 NA non-coding upstream 975218 9612543 ~ 9612781 (-)
fkbp1b fkbp1b other downstream 38328 8584193 ~ 8598167 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 341921 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 968709 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1115654 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 1653686 6936128 ~ 6982809 (-)
LOC113545281 samd15 other upstream 850893 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 871256 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 1113666 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 1206044 9843369 ~ 9843472 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 1894669 10531994 ~ 10538106 (-)

Expression


Co-expression Network