G292056


Basic Information

Item Value
gene id G292056
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8558351 ~ 8558856 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346044
CGTCAACTTATATCATGGCCGTTTTAAATTCAATATAACTTTAACCTGTGCAGATTtatacaatatggccaaaagactttgctgttataataacctccactcttctgggaaggctttccactagattttggagtgtggctgtggggatttgtgctcattcagccacaagagcattagcgagatcagacactgatgttgggtgaggaggaaTTGGGCGCAGTCAGttttccaattcatcccaaaggtgttcagtgaggttgaggtcagggtttcTTTGCAGGCCACtcgatttcttccactccaatcttggcaaaccatatctttaATGACCTcaatttgtgcacagggacattgttatgctggaccaggtttgggcctcttagttccagtgaagggaaattgtaatgctacagcatacaaagacatcctatacagttgtgtgcttccagctttgtggcaacagtttggggaagaaccacatatagatgtgatggtcaggtgtccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346044 True 506 lncRNA 0.44 1 8558351 8558856

Neighbor

gene id symbol gene type direction distance location
runx2b runx2b,runx2,LOC108258149,LOC107726745,LOC107678859,LOC103028241,LOC107697170,LOC108410521,LOC102312376 coding downstream 57655 8470888 ~ 8500696 (-)
mark3b LOC108258043,LOC108412004 coding downstream 117646 8385635 ~ 8440705 (-)
daam1b daam1b,LOC108257948,LOC108412077 coding downstream 208699 8301497 ~ 8349652 (-)
btbd6b btbd6,btbd6b,LOC107755235,LOC106571711,LOC107718408 coding downstream 651460 7903043 ~ 7906891 (-)
xrcc3 xrcc3 coding downstream 672811 7878647 ~ 7885540 (-)
mut mut,LOC107697172,LOC107726757,LOC107726528 coding upstream 3212 8562068 ~ 8582294 (-)
mfsd2b mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 47692 8606548 ~ 8627366 (-)
ubxn2a ubxn2a coding upstream 69798 8628654 ~ 8633045 (-)
LOC113545152 klhl29,LOC107742703,LOC107667613,LOC107697176 coding upstream 146556 8705412 ~ 8884899 (-)
trib2 trib2,LOC107717709,LOC107742704,LOC107667617 coding upstream 339210 8898066 ~ 8903105 (-)
G292009 NA non-coding downstream 91334 8466809 ~ 8467017 (-)
G291969 NA non-coding downstream 132881 8420416 ~ 8425470 (-)
G291949 l3hypdh,LOC107684001 non-coding downstream 259738 8298134 ~ 8298613 (-)
G291951 NA non-coding downstream 261007 8297130 ~ 8297344 (-)
G291813 jag2 non-coding downstream 432558 8123645 ~ 8125793 (-)
G292076 NA non-coding upstream 1651 8560507 ~ 8560729 (-)
G292231 NA non-coding upstream 77639 8636495 ~ 8637325 (-)
G292573 NA non-coding upstream 663160 9222016 ~ 9255248 (-)
G292695 LOC108258122,LOC108444466 non-coding upstream 848593 9407449 ~ 9407913 (-)
G292697 NA non-coding upstream 851387 9410243 ~ 9415603 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 263777 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 890565 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1037510 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 1575542 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 2576188 5962339 ~ 5982163 (-)
fkbp1b fkbp1b other upstream 25337 8584193 ~ 8598167 (-)
LOC113545281 samd15 other upstream 929362 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 949725 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 1192135 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 1284513 9843369 ~ 9843472 (-)

Expression


Co-expression Network