G292076


Basic Information

Item Value
gene id G292076
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 8560507 ~ 8560729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU346065
AGAAGCGGCATGTTGCTGCATAAGTAGGAACGGTCAATAGAGCTGTCTGAATTTTACTCTTCTGGATGCTGAAATGCAGGTTAGCAAATTACTTTCACCCTCCTTCAGAGATGCAATCACAATTTCAAAGACGAATCTATTATGTGGACAATTTTGAATAGCCTGTTGATCAGGTATTAAAGACAGAATGTTGCAGTTTTCAGTAAAGAGTACTGAATAGTTC

Function

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0009888 tissue development biological_process
GO:0048332 mesoderm morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU346065 True 223 lncRNA 0.38 1 8560507 8560729

Neighbor

gene id symbol gene type direction distance location
runx2b runx2b,runx2,LOC108258149,LOC107726745,LOC107678859,LOC103028241,LOC107697170,LOC108410521,LOC102312376 coding downstream 59811 8470888 ~ 8500696 (-)
mark3b LOC108258043,LOC108412004 coding downstream 119802 8385635 ~ 8440705 (-)
daam1b daam1b,LOC108257948,LOC108412077 coding downstream 210855 8301497 ~ 8349652 (-)
btbd6b btbd6,btbd6b,LOC107755235,LOC106571711,LOC107718408 coding downstream 653616 7903043 ~ 7906891 (-)
xrcc3 xrcc3 coding downstream 674967 7878647 ~ 7885540 (-)
mut mut,LOC107697172,LOC107726757,LOC107726528 coding upstream 1339 8562068 ~ 8582294 (-)
mfsd2b mfsd2b,si:dkeyp-115a10.3,LOC107750078,LOC107697177 coding upstream 45819 8606548 ~ 8627366 (-)
ubxn2a ubxn2a coding upstream 67925 8628654 ~ 8633045 (-)
LOC113545152 klhl29,LOC107742703,LOC107667613,LOC107697176 coding upstream 144683 8705412 ~ 8884899 (-)
trib2 trib2,LOC107717709,LOC107742704,LOC107667617 coding upstream 337337 8898066 ~ 8903105 (-)
G292056 NA non-coding downstream 1651 8558351 ~ 8558856 (-)
G292009 NA non-coding downstream 93490 8466809 ~ 8467017 (-)
G291969 NA non-coding downstream 135037 8420416 ~ 8425470 (-)
G291949 l3hypdh,LOC107684001 non-coding downstream 261894 8298134 ~ 8298613 (-)
G291951 NA non-coding downstream 263163 8297130 ~ 8297344 (-)
G292231 NA non-coding upstream 75766 8636495 ~ 8637325 (-)
G292573 NA non-coding upstream 661287 9222016 ~ 9255248 (-)
G292695 LOC108258122,LOC108444466 non-coding upstream 846720 9407449 ~ 9407913 (-)
G292697 NA non-coding upstream 849514 9410243 ~ 9415603 (-)
G292701 NA non-coding upstream 855662 9416391 ~ 9416590 (-)
LOC113545183 LOC108258142,LOC108257835 other downstream 265933 8186743 ~ 8294574 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 892721 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 1039666 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 1577698 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 2578344 5962339 ~ 5982163 (-)
fkbp1b fkbp1b other upstream 23464 8584193 ~ 8598167 (-)
LOC113545281 samd15 other upstream 927489 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 947852 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 1190262 9750991 ~ 9868641 (-)
LOC113545371 NA other upstream 1282640 9843369 ~ 9843472 (-)

Expression


Co-expression Network