G293480


Basic Information

Item Value
gene id G293480
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10681310 ~ 10681690 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347714
CTACCTTAAAGTCACACCGTTCTACCATATGAAGACTAGCTACCTTAAAGTCACACCATTCTACCTTATGAAGACTAGCTACCTTAAAGTCACACCGTTGTACCTTATGAAGACTAGCTACCTTAAAGTCACACTGTTCTACCATATGAAGACTAGCTACCTTAAAGTCACACTGTTGTACCTTATGAAGGCTAGCTACCTTAAAGTCACACCGTTCTACCATATGAAGGCTAGCTACCTTAAAGTAACACAGTTCTACCTTATGAAGGCTAGCTACCTTAAAGTAACACAGTTCTACCTTATGAAGACTAGCTACATTAAAGTCACACCGGTTCAATGCACTAAGCAGTGGATTAATAACTGTCAAGCAGGAGTTCGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347714 True 381 TUCP 0.40 1 10681310 10681690

Neighbor

gene id symbol gene type direction distance location
si:ch211-195d17.2 LOC108257787 coding downstream 94 10673520 ~ 10681216 (-)
cpsf3 cpsf3,LOC107756584,LOC107668237,LOC107693240,LOC107549104,LOC107601862 coding downstream 33556 10638966 ~ 10647754 (-)
taf1b taf1b coding downstream 97759 10572786 ~ 10583551 (-)
klf11a klf11 coding downstream 121269 10555695 ~ 10560041 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding downstream 129312 10547351 ~ 10551998 (-)
rnf144ab rnf144ab,LOC108411012 coding upstream 96995 10778685 ~ 10792590 (-)
sox11b LOC108258189 coding upstream 190262 10871952 ~ 10874367 (-)
allc allc coding upstream 324642 11006332 ~ 11013132 (-)
rps7 rps7,LOC107668222 coding upstream 336712 11018402 ~ 11024886 (-)
hebp2 LOC108257783,LOC108411258 coding upstream 596764 11278454 ~ 11284551 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding downstream 69815 10609935 ~ 10611495 (-)
G293374 NA non-coding downstream 142671 10538426 ~ 10538639 (-)
LOC117599772 NA non-coding downstream 306754 10363005 ~ 10374556 (-)
G293316 NA non-coding downstream 321842 10359223 ~ 10359468 (-)
G293315 NA non-coding downstream 322209 10358497 ~ 10359101 (-)
G293513 NA non-coding upstream 192833 10874523 ~ 10874747 (-)
G293514 NA non-coding upstream 193758 10875448 ~ 10875669 (-)
G293515 NA non-coding upstream 194443 10876133 ~ 10876356 (-)
LOC113532439 NA non-coding upstream 337497 11019187 ~ 11019407 (-)
G293531 NA non-coding upstream 338889 11020579 ~ 11022955 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 143204 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 812669 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 837838 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 1165133 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 1190040 9488218 ~ 9491270 (-)
id2b LOC108257525 other upstream 61949 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1387279 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1413728 12095418 ~ 12219424 (-)
G294369 NA other upstream 1559299 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 1560889 12242579 ~ 12246178 (-)

Expression


Co-expression Network