G293374


Basic Information

Item Value
gene id G293374
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10538426 ~ 10538639 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347586
cttgggtgacTGTGTGGAGTATTGCATAATTTCCCCACGCTCACATGGGTTTCGTCTGGGTTTTCTAGGTTTCCACTCCCTGTCCATTTTGCAGGACTAAGTGtcaatgtgagtgtgtgtgtgtgtgtgtgtgtatggttctCTGCAACGGTCTggtgtcccatctggggtgaataTTCTCCTGCTTTGTGCCTGGAGagccaccatgaccctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347586 True 214 lncRNA 0.50 1 10538426 10538639

Neighbor

gene id symbol gene type direction distance location
grem1a grem1 coding downstream 7973 10527829 ~ 10530453 (-)
ryr3 ryr3 coding downstream 42733 10412045 ~ 10495693 (-)
chrm5b chrm5 coding downstream 142664 10380919 ~ 10395762 (-)
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 270726 10257496 ~ 10267700 (-)
LOC113532350 LOC108257934,LOC108257933 coding downstream 310615 10225451 ~ 10227811 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 131 10538770 ~ 10542055 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding upstream 8712 10547351 ~ 10551998 (-)
LOC113532436 NA coding upstream 11248 10549887 ~ 10550026 (-)
klf11a klf11 coding upstream 17056 10555695 ~ 10560041 (-)
taf1b taf1b coding upstream 34147 10572786 ~ 10583551 (-)
LOC117599772 NA non-coding downstream 163870 10363005 ~ 10374556 (-)
G293316 NA non-coding downstream 178958 10359223 ~ 10359468 (-)
G293315 NA non-coding downstream 179325 10358497 ~ 10359101 (-)
G293296 NA non-coding downstream 222557 10315658 ~ 10315869 (-)
G293276 NA non-coding downstream 291924 10246082 ~ 10246502 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding upstream 71296 10609935 ~ 10611495 (-)
G293513 NA non-coding upstream 335884 10874523 ~ 10874747 (-)
G293514 NA non-coding upstream 336809 10875448 ~ 10875669 (-)
G293515 NA non-coding upstream 337494 10876133 ~ 10876356 (-)
LOC113532439 NA non-coding upstream 480548 11019187 ~ 11019407 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 320 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 669785 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 694954 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 1022249 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 1047156 9488218 ~ 9491270 (-)
G293480 NA other upstream 142671 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 205000 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1530330 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1556779 12095418 ~ 12219424 (-)
G294369 NA other upstream 1702350 12240989 ~ 12241901 (-)

Expression


Co-expression Network