actc1a (actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871)


Basic Information

Item Value
gene id actc1a
gene name actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10538770 ~ 10542055 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922788.2
CATTTTTCAACAGCTCTTATTTAGGCTTGTGTGAATACTTGAGCCCGCCCCTGGCCCCCGGCCCCCTGCTATATTTAAGGAGCATCCCTCACACTCACCCTCTGTCCCAGTGGAAACTCCAGTCTTCCAGTACAGCTTGaccaacccagaaaaaaacaatcatgtgtGACGACGACGAGACCACCGCCCTCGTGTGCGACAACGGCTCTGGTTTGGTCAAGGCTGGGTTTGCCGGTGATGACGCTCCCCGTGCCGTCTTCCCTTCCATCGTTGGAAGACCCCGTCACCAGGGTGTGATGGTGGGTATGGGTCAGAAGGACAGCTACGTTGGAGATGAGGCCCAGAGCAAGAGAGGTATCCTGACTCTGAAGTACCCCATTGAGCACGGTATCATCACCAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCACCCTACACTGCTCACTGAGGCCCCCCTCAACCCCAAGGCCAACAGGGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATGTCCCAGCCATGTATGTGGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGCCGTACCACTGGTATTGTGCTGGACTCTGGTGATGGTGTGACCCACAATGTCCCCATCTATGAGGGTTATGCTCTCCCCCACGCCATCATGCGTCTGGACCTGGCTGGTCGTGACCTGACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTTGTGACCACTGCTGAGCGTGAGATTGTGCGTGACATCAAGGAGAAGCTGTGCTATGTCGCTCTGGACTTTGAGAATGAGATGGCCACCGCTGCATCATCCTCCTCCCTGGAGAAATCCTACGAGTTGCCCGACGGCCAGGTCATCACCATTGGCAACGAGCGTTTCCGTTGCCCCGAGACCCTCTTCCAGCCTTCCTTCATTGGTATGGAGTCTGCTGGTATCCATGAGACTGCCTACAACAGCATCATGAAGTGCGACATTGACATCCGCAAGGACCTGTACGCCAACAACGTCCTGTCTGGTGGTACCACCATGTACCCTGGTATTGCTGACCGCATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATTGCTCCCCCTGAGCGTAAGTACTCTGTCTGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCAGCAAGCAGGAATATGACGAGGCTGGCCCCTCCATTGTCCACAGGAAATGCTTCTAAACGCCTATCCTATCTGTCCAGCTCTCCCCCTGTCTGCATTTGTACTGTTTCgattactgtatatacatgttCTATTGTAATAAAGTTAATTACCTGTAACAGTA

Function

symbol description
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

NR:

description
PREDICTED: actin, alpha cardiac isoform X1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922788.2 True 1399 mRNA 0.54 9 10538770 10542055

Neighbor

gene id symbol gene type direction distance location
grem1a grem1 coding downstream 8317 10527829 ~ 10530453 (-)
ryr3 ryr3 coding downstream 43077 10412045 ~ 10495693 (-)
chrm5b chrm5 coding downstream 143008 10380919 ~ 10395762 (-)
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 271070 10257496 ~ 10267700 (-)
LOC113532350 LOC108257934,LOC108257933 coding downstream 310959 10225451 ~ 10227811 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding upstream 5296 10547351 ~ 10551998 (-)
LOC113532436 NA coding upstream 7832 10549887 ~ 10550026 (-)
klf11a klf11 coding upstream 13640 10555695 ~ 10560041 (-)
taf1b taf1b coding upstream 30731 10572786 ~ 10583551 (-)
cpsf3 cpsf3,LOC107756584,LOC107668237,LOC107693240,LOC107549104,LOC107601862 coding upstream 96911 10638966 ~ 10647754 (-)
G293374 NA non-coding downstream 131 10538426 ~ 10538639 (-)
LOC117599772 NA non-coding downstream 164214 10363005 ~ 10374556 (-)
G293316 NA non-coding downstream 179302 10359223 ~ 10359468 (-)
G293315 NA non-coding downstream 179669 10358497 ~ 10359101 (-)
G293296 NA non-coding downstream 222901 10315658 ~ 10315869 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding upstream 67880 10609935 ~ 10611495 (-)
G293513 NA non-coding upstream 332468 10874523 ~ 10874747 (-)
G293514 NA non-coding upstream 333393 10875448 ~ 10875669 (-)
G293515 NA non-coding upstream 334078 10876133 ~ 10876356 (-)
LOC113532439 NA non-coding upstream 477132 11019187 ~ 11019407 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 664 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 670129 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 695298 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 1022593 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 1047500 9488218 ~ 9491270 (-)
G293480 NA other upstream 139255 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 201584 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1526914 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1553363 12095418 ~ 12219424 (-)
G294369 NA other upstream 1698934 12240989 ~ 12241901 (-)

Expression


Co-expression Network