G293315


Basic Information

Item Value
gene id G293315
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10358497 ~ 10359101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU347518
gcaaagtctaatctggcctttgtgttcttgagttttaccagtggtttgcatcttgaggtaaaccatctgtatttacattcatggagATATCTCTTgactgtagactttgacaatgatggcctccttctcTTGCATTGaaacctctttggaccacatagtgagagttcccatgaacagctaccaaatgcaaattcaacacttggaatcaactccagaccttttatctccttaatttgtcatgaaataatgaggaaacaggccacaactggccatgaaactgcttatcagtcaattgtccaattacttttgagcctgtgaaaatggagggactccaaTAATtactaaatggttaatgcattatttttgttagagccaatgaattaaagttgaaagtctatacttcatcttgattgcttcatttcaaatccattgtggtggtgtacagaggcaaagttacaaaaattgtgtcactgtccaaatacttatggacctgactctAAATGCATACTTGAACACATATCTCTGCACAGTCTTAAACATATTCAGACATACCTTATATTTAGACATACCTGACATGTGTAATAACATTTAATCTTAACTACATT

Function

NR:

description
PREDICTED: protein ELYS-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU347518 True 605 lncRNA 0.36 1 10358497 10359101

Neighbor

gene id symbol gene type direction distance location
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding downstream 90797 10257496 ~ 10267700 (-)
LOC113532350 LOC108257934,LOC108257933 coding downstream 130686 10225451 ~ 10227811 (-)
LOC113532348 LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846 coding downstream 138913 10217742 ~ 10219584 (-)
LOC113532347 LOC108257934,LOC108257933,LOC106674865,LOC101066992,LOC103389000 coding downstream 150883 10206021 ~ 10207614 (-)
stx11b.1 LOC108257894,LOC103032305 coding downstream 223171 10132583 ~ 10135326 (-)
chrm5b chrm5 coding upstream 21818 10380919 ~ 10395762 (-)
ryr3 ryr3 coding upstream 52944 10412045 ~ 10495693 (-)
grem1a grem1 coding upstream 168728 10527829 ~ 10530453 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 179669 10538770 ~ 10542055 (-)
LOC113532384 rrm2,LOC107668265,LOC107549099 coding upstream 188250 10547351 ~ 10551998 (-)
G293296 NA non-coding downstream 42628 10315658 ~ 10315869 (-)
G293276 NA non-coding downstream 111995 10246082 ~ 10246502 (-)
LOC117599775 NA non-coding downstream 162216 10187821 ~ 10196281 (-)
LOC117599728 NA non-coding downstream 177808 10179966 ~ 10180689 (-)
G293082 NA non-coding downstream 330494 10027305 ~ 10028003 (-)
G293316 NA non-coding upstream 122 10359223 ~ 10359468 (-)
LOC117599772 NA non-coding upstream 3904 10363005 ~ 10374556 (-)
G293374 NA non-coding upstream 179325 10538426 ~ 10538639 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding upstream 250834 10609935 ~ 10611495 (-)
G293513 NA non-coding upstream 515422 10874523 ~ 10874747 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 489856 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 515025 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 842320 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 867227 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1760330 8584193 ~ 8598167 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 172893 10531994 ~ 10538106 (-)
G293480 NA other upstream 322209 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 384538 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1709868 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1736317 12095418 ~ 12219424 (-)

Expression


Co-expression Network